Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00704 ATGGATCCACCTACTCTGATGAACCAAGGGTCATTTCCTAATGACGCTAATGCCAATGCAAATGCGACGGCGTACAATCTCTCCGAGATCTGGCAGTTCCCAATTAATGGCGGAACTGGCGTTGAGGAATCTGGAGGTGGGCTCGGATTGAGGATGGCTCAGTTTGCTCATAATTTGGGGCAGTTTGGAGAGATTGCCATGGAGAATCCAGACGTTTTGCGCGGTGATCCAGTGAGCCAGAGAGTAGTAGGTCATGGCCATGGCGGTTCCAAGAAGCGGCGTGATTCAGAGCTCGATTCGACTAAGGCCAGTTCCACCAGTAATGGCAACAATGGCAACAATGGCAATAGCGGCGAGGCGAATGTCTCTGGTGGAAAACGCCTTAAAACAGCAGCTTGTAGAGATGATAATCACGCATCTAAAACAGAAGCAGAACCTAGATCTGGCAAGGCCGAGTGTAACTCCCAGCCCCCACCAGAACAACCCAAACAGGATTACATTCATGTGCGAGCAAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCTGAACGGGCTAGAAGAGAAAAGATAAGTGACAGAATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCGCTTCAGCACCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAGTTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGTCAGCAGACATTCGATACAACTGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCAGCCGTGGCCCATCGCCAGAATGGCTACACATGCAGATCGGTGGGGGCTTCGAAAGAACGACATAG 894 47.76 MDPPTLMNQGSFPNDANANANATAYNLSEIWQFPINGGTGVEESGGGLGLRMAQFAHNLGQFGEIAMENPDVLRGDPVSQRVVGHGHGGSKKRRDSELDSTKASSTSNGNNGNNGNSGEANVSGGKRLKTAACRDDNHASKTEAEPRSGKAECNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRVSPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSSRGPSPEWLHMQIGGGFERTT 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3874970 3878233 + CmaCh12G007040.1 Cma12g00704 305194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00704 297 MobiDBLite consensus disorder prediction 129 148 - -
Cma12g00704 297 Coils Coil 222 242 - -
Cma12g00704 297 Gene3D - 172 245 IPR036638 GO:0046983
Cma12g00704 297 SMART finulus 181 231 IPR011598 GO:0046983
Cma12g00704 297 MobiDBLite consensus disorder prediction 101 123 - -
Cma12g00704 297 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 297 IPR024097 GO:0006355
Cma12g00704 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 225 IPR011598 GO:0046983
Cma12g00704 297 PANTHER BNAC05G07950D PROTEIN 1 297 - -
Cma12g00704 297 MobiDBLite consensus disorder prediction 71 163 - -
Cma12g00704 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 242 IPR036638 GO:0046983
Cma12g00704 297 CDD bHLH_AtBPE_like 165 250 - -
Cma12g00704 297 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00164 Cma-Chr10:753260 Cma12g00704 Cma-Chr12:3874970 3.81E-88 dispersed
Cma11g00175 Cma-Chr11:906624 Cma12g00704 Cma-Chr12:3874970 2.38E-88 dispersed
Cma12g00704 Cma-Chr12:3874970 Cma06g01607 Cma-Chr6:10016680 8.54E-50 dispersed
Cma12g00704 Cma-Chr12:3874970 Cma05g00949 Cma-Chr5:7663330 2.49E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36015 PF00010 HLH 1.20E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00704 - - csv:101209222 445.277