Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00705 ATGTCGTCGAGTAGACCCAGCCGGTCCACAAACACAGGAGGATCCTCCTCCTCACAATCAAGACACACTTCAAGAATTCTCGCTCAAACCTCCATAGACGCAAAGCTCCACTCCCACTTCCAACACTCCAATTCTTCATTCGACTACTCTACTTCAATCCATCTCACAGCCAACCCACCATCAACCACCACCACCGCCACCACCACCGCATACCTCCACCACATCCAACGCTCCAACCTCATCCAACCCTTCGGCTGCCTCATAGCCCTCCACCCAACCACCCACAAACTCATCGCCTTCAGCCAAAACGCCCCTGAATTCCTCACCACAGTCTCCCACACCGTCCCCACCATCTCCGACCGCCCCGTCCTCGCCTTCGGCACCACCCTCCATTCCATCTTCACCCCTCCCACCGCCACAGCCCTCCTCAAAGCTCTAGCCTTTCCCGACGTCACTCTCCTCAACCCCATTCTCGCCCACTCCAAATCCTCACAAAAGCCCTTTTACGCCATTCTCCACCGTGTTACCGGCAGCCTCATCATCGACTTCGAACCCGTCAACCCCGACGAAGTCCCCGTCACCGCAGCCGGTGCTCTCCAATCATATAAACTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCTAGTGGGAGCATGGCCAGGCTTTGTGACACCATGGTTCAAGAAGTGTTTGAACTCACAGGATATGACCGAGTCATGGCATATAAATTCCATGATGATGATCATGGGGAGGTGTTCTCTGAGGTTACAAAGCCTGGACTTGACCCATATCTTGGATTGCATTATCCAGCCACTGACATCCCTCAAGCTGCAAGATTTTTATTCATGAAGAACAAGGTTAGAATGATTGTGGACTGCAAAGCCAAGCATGTCAAGGTGATTCAAGACCCAAATCTTGAGTTTGACTTGACATTATGTGGGTCAACTTTGAGAGCTCCTCATAGTTGCCATTTACAATACATGGAGAATATGGATTCAATTGCATCTTTAGTTATGGCAATTGTGGTGAATGAGGAAGAACATGAAGAACAATTTGATCATAAAAACAAGAGAAAAAGATTATGGGGTTTGGTGGTTTGTCATAACACAACTCCAAGATTTGTTCCATTTCCTCTTAGATATGCATGTGAGTTTCTAGCTCAAGTGTTTGCCATTCATGTCAACAAAGAATTGGAATTGGAGAATCAAATTTTGGAGAAGAATATCTTAAGAACTCAAACGCTTTTGTGTGATATGTTGATGCGTGATGCACCATTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTGAAGTCAGATGGGGCTGCATTGTTGTACAATGATAAGGTATGGAGATTAGGGATGACTCCTAATGATTTTGAGCTTCATGATATTGCTTCATGGATTTTGGAGTATCATGTGGATTCTACTGGATTGAGTACGGATAGCTTGTACGATGCGGGGTACCATGGTGCGGTTGCTCTAGGAGACGGCGTGTGTGGGATGGCGGCGGTGAGGCTAGGTTGCAACGACATGATTTTTTGGTTCCGATCACACGCTGCATCGGAAATTAGGTGGGGCGGGGCGAAGCATGAGGCGGGTGAGAAAGATGATGGAAGGAGAATGCATCCTAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCTATTCATTCTTTGCAGCTTATACTAAGAAACACTTACAAAGATAAAGAGATTAATAAGAGTTCAATACAATCAACACTTAGTGACCTCAAAATTGATGGGAGGCAAGAAATTGAATCAGTGACATGTGAGATGGTGAGGTTGATTGAAACGGCTAGTGTTCCAATTTTGGCTGTTGATGTGGATGGGCTCGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGAATTTGTGTTGACAAGGCTATTGGCAAGCATTTGTTGACATTGGTGGAAGATTCTTCATTAGAAACTGTGAAGAAGATGTTGTTCTTGGCCTTGCAAGGCCAAGAGGAGAAAGACGTCCAATTTGAGATAAAAACACAAGGCTCACACATGGAATCAAGCTCAATCAGCCTAATAGTAAATGCATGTGCAAGCAAGGACTTGTGTGAGAACGTAGTGGGAGTGTGCTTCGTAGCACAAGACATCACCCATGAAAAGAAAGTGATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTAATCCCTCCAATATTTGGGGTAGACGAATTCGGTTGGTGCACAGAGTGGAACTTAGCAATGGCAAATCTAAGTGGATGGTCAAGAGAAGAAGTGCTGAACAAGATGCTTTTGGGGGAAGTGTTTGGGTCATGCTGCCATGTAAAGAACCAAGAAGCCTTTGTGAATCTTGGGATTGTTTTGAACAATGCCATGAGTGGCCAAGATTCTGATAAGATATCATTTGGGTTCTTTGGTAGAAGTGGGATGTTTGTGGAATGCCTTCTTTGTGTGAATAAGATAATGGATAGAGATGGGGAAGTGATTGGGGTTTTTTGCTTCTTGCAGCTTGCTAGCCAAGAGCTGCAACAAGCTTTGAATGTTCAAAAGTTGTGTGAGAGAACGGCTTTGAAAAGGTTGAAGGCTTTGGGATATATTAAGAGGCAGATCCAAAATCCTCTTTGTGGGATTGTTTTTTCGAGTAAAATGTTGGAGACATCTCAGTTGGGTGATGAACAGAACCAGCTTTTGCTTAATAGTGGCGATTGTCAAAGGCAGATCTTCAAGGTTCTTCATGATTCGGATGATCTTGATAAGATTATTGAAGGCTTCATTGATTTAGAAATGGTTGAGTTCTCATTACATGAAGCATTAGTGGTATCAATTAGTCAAGTAATGATGAAGAGCCAAGGAAAAGGTATCCAAATAGTAAACGAGGTAGCAGAAGAGATCATGTCCGAGACCTTATATGGAGACAGTTTGAGACTTCAACAAGTAATGGCTGATTTCTTGTTGATATCAATAAATTACACACCAACAGGAAGCAGCATTATGGTTTCAACAAATTTGACAAAGGATGAATCAGGGAAGTCAGTGAATCTTGTGCATGTGGAGTTCAGGATAACATATGTCGGTGGAGGCATGCCAGAATCGTTGTTGAATGAGATGTTTGGGAATGATGAGGAGGCGTCTGAAGAAGGTTTTAGCCTTCTCGTGAGTAGAAAGTTGGTGAAGTTGATGAATGGAGAGGTGAGATATGTGAGGGAAGCAGCCAATTCAACCTTCATCATAACTCTTCAGCTTGCTGCAGCTCATAAATAG 3345 44.28 MSSSRPSRSTNTGGSSSSQSRHTSRILAQTSIDAKLHSHFQHSNSSFDYSTSIHLTANPPSTTTTATTTAYLHHIQRSNLIQPFGCLIALHPTTHKLIAFSQNAPEFLTTVSHTVPTISDRPVLAFGTTLHSIFTPPTATALLKALAFPDVTLLNPILAHSKSSQKPFYAILHRVTGSLIIDFEPVNPDEVPVTAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKHVKVIQDPNLEFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEHEEQFDHKNKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYNDKVWRLGMTPNDFELHDIASWILEYHVDSTGLSTDSLYDAGYHGAVALGDGVCGMAAVRLGCNDMIFWFRSHAASEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDKEINKSSIQSTLSDLKIDGRQEIESVTCEMVRLIETASVPILAVDVDGLVNGWNSKIAELTGICVDKAIGKHLLTLVEDSSLETVKKMLFLALQGQEEKDVQFEIKTQGSHMESSSISLIVNACASKDLCENVVGVCFVAQDITHEKKVMDKFTKLQGDYKAIVQNPNPLIPPIFGVDEFGWCTEWNLAMANLSGWSREEVLNKMLLGEVFGSCCHVKNQEAFVNLGIVLNNAMSGQDSDKISFGFFGRSGMFVECLLCVNKIMDRDGEVIGVFCFLQLASQELQQALNVQKLCERTALKRLKALGYIKRQIQNPLCGIVFSSKMLETSQLGDEQNQLLLNSGDCQRQIFKVLHDSDDLDKIIEGFIDLEMVEFSLHEALVVSISQVMMKSQGKGIQIVNEVAEEIMSETLYGDSLRLQQVMADFLLISINYTPTGSSIMVSTNLTKDESGKSVNLVHVEFRITYVGGGMPESLLNEMFGNDEEASEEGFSLLVSRKLVKLMNGEVRYVREAANSTFIITLQLAAAHK 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3888331 3894142 + CmaCh12G007050.1 Cma12g00705 305195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00705 1114 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Cma12g00705 1114 ProSiteProfiles PAS repeat profile. 745 823 IPR000014 -
Cma12g00705 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 862 IPR035965 -
Cma12g00705 1114 SMART gaf_1 219 409 IPR003018 GO:0005515
Cma12g00705 1114 Gene3D - 951 1113 IPR036890 -
Cma12g00705 1114 SMART HKATPase_4 999 1111 IPR003594 -
Cma12g00705 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 189 IPR035965 -
Cma12g00705 1114 SUPERFAMILY GAF domain-like 199 396 - -
Cma12g00705 1114 Gene3D - 200 560 IPR029016 -
Cma12g00705 1114 CDD PAS 623 729 IPR000014 -
Cma12g00705 1114 Gene3D PAS domain 74 322 - -
Cma12g00705 1114 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 615 631 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 634 649 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355|GO:0009584
Cma12g00705 1114 Coils Coil 396 416 - -
Cma12g00705 1114 SUPERFAMILY GAF domain-like 407 584 - -
Cma12g00705 1114 Pfam Phytochrome region 412 587 IPR013515 GO:0006355|GO:0009584
Cma12g00705 1114 SMART pas_2 614 680 IPR000014 -
Cma12g00705 1114 SMART pas_2 744 814 IPR000014 -
Cma12g00705 1114 Pfam GAF domain 220 399 IPR003018 GO:0005515
Cma12g00705 1114 Gene3D PAS domain 614 744 - -
Cma12g00705 1114 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 999 1109 IPR003594 -
Cma12g00705 1114 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 944 1107 IPR036890 -
Cma12g00705 1114 CDD PAS 756 864 IPR000014 -
Cma12g00705 1114 Pfam PAS fold 70 186 IPR013654 GO:0006355
Cma12g00705 1114 Gene3D - 404 577 IPR043150 -
Cma12g00705 1114 PANTHER PHYTOCHROME A 2 1112 - -
Cma12g00705 1114 MobiDBLite consensus disorder prediction 1 24 - -
Cma12g00705 1114 PIRSF Phytochrome_conventional 1 1114 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cma12g00705 1114 ProSiteProfiles Histidine kinase domain profile. 893 1111 IPR005467 -
Cma12g00705 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 725 IPR035965 -
Cma12g00705 1114 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 389 IPR016132 -
Cma12g00705 1114 Pfam PAS fold 615 729 IPR013767 GO:0006355
Cma12g00705 1114 Pfam PAS fold 745 864 IPR013767 GO:0006355
Cma12g00705 1114 Gene3D PAS domain 758 871 - -
Cma12g00705 1114 ProSiteProfiles PAS repeat profile. 612 682 IPR000014 -
Cma12g00705 1114 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 1112 - -
Cma12g00705 1114 TIGRFAM sensory_box: PAS domain S-box protein 619 735 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00705 Cma-Chr12:3888331 Cma19g00854 Cma-Chr19:8014444 0 dispersed
Cma12g00705 Cma-Chr12:3888331 Cma05g00948 Cma-Chr5:7645389 0 wgd
Cma12g00705 Cma-Chr12:3888331 Cma05g00948 Cma-Chr5:7645389 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00705 K12120 - csv:101219585 1812.73