Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00715 ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGTCGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAGCCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCCGCCTTCGAACCAGCCTCTCAGACCGATTCATATTCGCCACAAACTCGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCTGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTTGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCACGATCCCTACAAGGGAAAAAGCGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAATGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGCTGGCATACGATTGCGAACACCATGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGGGGTGAGTCGGGTGACTTTGAATGGAGCAGATAG 825 49.45 MLRLQWLSSSLLPPLNPELCAQPCKNPRRCRFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSYSPQTRAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMMRPEDSSRVNNANPRYGGESGDFEWSR 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3975161 3978727 + CmaCh12G007150.1 Cma12g00715 305205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00715 274 Pfam Whirly transcription factor 94 228 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cma12g00715 274 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 68 274 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cma12g00715 274 SUPERFAMILY ssDNA-binding transcriptional regulator domain 86 266 IPR009044 GO:0003677|GO:0006355
Cma12g00715 274 MobiDBLite consensus disorder prediction 251 274 - -
Cma12g00715 274 Gene3D Transcriptional Coactivator Pc4; Chain A 79 252 IPR009044 GO:0003677|GO:0006355
Cma12g00715 274 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 68 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00881 Cma-Chr1:4979449 Cma12g00715 Cma-Chr12:3975161 8.63E-50 dispersed
Cma12g00715 Cma-Chr12:3975161 Cma05g00932 Cma-Chr5:7543191 7.16E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36016 PF08536 Whirly 2.30E-59 CL0609 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00715 - - csv:101203474 443.736