Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00718 ATGGAACCTGAGACACTGGTTGACAACGATAACGCGAAAGAGAAAGAAGACTACAAAATTTATACGATGTCCTCACCACTCTGTTCGTCAATTCGGGCATTGGCACCGCAGTGTTGGCGGCGGACGAACTTGAGATTCTTCATATTGCTTCAATCCAAGAGATGTGTAGGCTTCGCGCCTCGCTTCGTTGCTTGTTTGAGCAGTAATGACGACTCTGTTGCAATCCCCAAACCGGTGCCGCTCGCCTTCGATCCTGTGGAGGAGATGTACGGACTTGGCGTCGATTTAAAACCAAGGAATTCAAATTCCAGCGCTCCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAGAGAGCTACCTTGTCCAAGTTGCCGAGGCAGGGGCTATGCGCCGTGTACGGAATGTGGAATTGAAAGATCCCGTGCAGACTGTTCCGTGTGTAATGGAAAGGGAATAGTGACCTGCCACCAATGCTTGGGAGATCGTGTCATATGGGAAGAGTCCATTGATGAACGACCATGGGAGAAAGCACGCTCCACTTCTCCATTAAGAATGAAGGAAGACGATGAAGTTGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCACCTCCTCCTGAAGTTGGATTGAAGATCAGCCGATCATTAAAAAGTCTCAATGCCAAAACAGGTCTATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCCACTCTTCATGCCCAGAGAGTGGCAGCAATTAAGAAAGCCAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTCAGTGATCCAAAAAATCGTCAAAAGCGGAGCATTTCAATGAAAGGAATAAAATTTTACTGTAAAAACTGTGGACGTGAGGGGCATCGAAGACACTATTGTCCAGAACTTAAGGACGATTCAATCGATAGGCGGTTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACAGAAGGACCTGTAAGAAGTCTAGGTTGAATAGTAAACCAATGAGCGCAGGTGTTAAGAAGGGTCACAGCAGGAGAAACTGTTCGAAGTCCGAGATGAGAAATCCAAATAAAGGTACACATTATCCCCAACATCAGAATCCTGGCAATGTGTTGAGCCTGAATTTGATCAATGGAGATAGGATGACTAATGAAAGCAGCAGAGTGAGGCAGTATCGTTGTCGGATCTGCGAAGAAAATGGTCACAATCGGCAGAATTGTCCCAATATCGACACGAAAGTTAACCATACAACTCGTAGAAAAACATACAGCTGCAAACTATGTCATGAAAAAGGGCATAACAGTAGAACATGCCCAGTTATAAACATGAACAATCTACAGAAAAATTCTCCCGGCGCTGTAAACCAATGA 1410 44.54 MEPETLVDNDNAKEKEDYKIYTMSSPLCSSIRALAPQCWRRTNLRFFILLQSKRCVGFAPRFVACLSSNDDSVAIPKPVPLAFDPVEEMYGLGVDLKPRNSNSSAPEPRSWFGPNGQYIRELPCPSCRGRGYAPCTECGIERSRADCSVCNGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPTLHAQRVAAIKKAKGSAEARKRTSEALKAFFSDPKNRQKRSISMKGIKFYCKNCGREGHRRHYCPELKDDSIDRRFRCRVCGEKGHNRRTCKKSRLNSKPMSAGVKKGHSRRNCSKSEMRNPNKGTHYPQHQNPGNVLSLNLINGDRMTNESSRVRQYRCRICEENGHNRQNCPNIDTKVNHTTRRKTYSCKLCHEKGHNSRTCPVINMNNLQKNSPGAVNQ 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3991845 4005216 + CmaCh12G007180.1 Cma12g00718 305208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00718 469 MobiDBLite consensus disorder prediction 366 381 - -
Cma12g00718 469 Gene3D - 393 455 - -
Cma12g00718 469 SUPERFAMILY Retrovirus zinc finger-like domains 295 342 IPR036875 GO:0003676|GO:0008270
Cma12g00718 469 SUPERFAMILY Retrovirus zinc finger-like domains 396 429 IPR036875 GO:0003676|GO:0008270
Cma12g00718 469 SMART c2hcfinal6 406 422 IPR001878 GO:0003676|GO:0008270
Cma12g00718 469 SMART c2hcfinal6 324 340 IPR001878 GO:0003676|GO:0008270
Cma12g00718 469 SMART c2hcfinal6 297 313 IPR001878 GO:0003676|GO:0008270
Cma12g00718 469 SMART c2hcfinal6 437 453 IPR001878 GO:0003676|GO:0008270
Cma12g00718 469 Gene3D - 296 348 - -
Cma12g00718 469 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 397 456 - -
Cma12g00718 469 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 30 371 - -
Cma12g00718 469 ProSiteProfiles Zinc finger CCHC-type profile. 298 313 IPR001878 GO:0003676|GO:0008270
Cma12g00718 469 MobiDBLite consensus disorder prediction 341 381 - -
Cma12g00718 469 ProSiteProfiles Zinc finger CCHC-type profile. 324 340 IPR001878 GO:0003676|GO:0008270
Cma12g00718 469 Coils Coil 187 207 - -
Cma12g00718 469 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 397 456 - -
Cma12g00718 469 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 30 371 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00718 - - csv:101211176 714.531