Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00720 ATGTCGATCTCTTCTTCCTCCAATTGCTTCATTGACTCTCACCTACTCTGTGATGAGGACTCCTCCGGTATTTTGTCTGGAGAGTCGCTGGAGTACTTGACGGATTTTGAATCGGCGGATAGTAGTGAGGATTCTATCGCTAGTTTCATAGAGGACGAGAAGCACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTGGACTCTTCCGCTAGAGCTGACTCTGTTGCATGGATTCTCAAGGTTCACTCGTATTACGGTTTTCAACCACTCACCGCATACCTCTCCGTGAACTACTTGGATCGTTTCCTTTATTCTCGCCCCTTGCCGGAAACAAATGGGTGGAAGATGCAGCTCCTTTCAGTGGCTTGTTTGTCACTTGCAGCAAAAATGGAGGAACCCCTTGTTCCTTCTTTCCTGTATCTCCAGATTGGAGGAGCAAAACATATATTTGAGCCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTGCGATCTGTAACGCCCTTGAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCAGCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACAGAAATTATTCTGTCCAATCTTCGAGACGCTAGCTTTCTCGAGTACTGGCCCTCCTGCATTGCTGCCGCAGCCTTACTATGTGCGGCAAATGAAATTCCAAATTTGACCCTCTTGAATCCTGAACACGCCGAGTCCTGGTGCAACGGACTGAACAAAGAAAAAATTGGTGGGTGTTATCGGCTAATGCAGCAGCCGTTAGCATCGAAAGTGATAGTGCCACTCCGAGTCCGAATCCGAGCTGGGTTGAGGTACATTGACTCATCATCCTCATCCTCCCCATCATCAACATTACCTTTTAAAAGAAGAAAATTGAATAATTGCGTGTACCCAGAAGATGACAAAGAAAATTCCGAACTTAGAGAAGATCAGTAA 990 46.06 MSISSSSNCFIDSHLLCDEDSSGILSGESLEYLTDFESADSSEDSIASFIEDEKHFVPGIDYLSRFQSQSLDSSARADSVAWILKVHSYYGFQPLTAYLSVNYLDRFLYSRPLPETNGWKMQLLSVACLSLAAKMEEPLVPSFLYLQIGGAKHIFEPRTIRRMELLVLTTLNWRLRSVTPLSFIGFFAYKVDPSGTFSSFLNSRSTEIILSNLRDASFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLNKEKIGGCYRLMQQPLASKVIVPLRVRIRAGLRYIDSSSSSSPSSTLPFKRRKLNNCVYPEDDKENSELREDQ 329
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 4008137 4011736 - CmaCh12G007200.1 Cma12g00720 305210
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00720 329 PANTHER CYCLIN-D1-1 25 312 - -
Cma12g00720 329 CDD CYCLIN 76 168 IPR013763 -
Cma12g00720 329 Pfam Cyclin, C-terminal domain 178 272 IPR004367 -
Cma12g00720 329 Gene3D - 48 238 - -
Cma12g00720 329 SMART Cyclin_C_2 178 300 IPR004367 -
Cma12g00720 329 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Cma12g00720 329 PANTHER CYCLINS 25 312 IPR039361 -
Cma12g00720 329 SUPERFAMILY Cyclin-like 160 272 IPR036915 -
Cma12g00720 329 Gene3D - 59 176 - -
Cma12g00720 329 SMART cyclin_7 81 169 IPR013763 -
Cma12g00720 329 SUPERFAMILY Cyclin-like 40 175 IPR036915 -
Cma12g00720 329 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00416 Cma-Chr3:4480686 Cma12g00720 Cma-Chr12:4008137 1.51E-25 dispersed
Cma12g00720 Cma-Chr12:4008137 Cma16g00310 Cma-Chr16:1444756 7.80E-62 dispersed
Cma12g00720 Cma-Chr12:4008137 Cma05g00923 Cma-Chr5:7375401 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00720 K18810 - csv:101210686 541.191