Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00737 ATGGTGGGGAAGCCTAGCTCGGTTTCCTTCAGGGTTCCGTACCGGAACCTCCAGGATGCGGAAGTAGAGATGGTGGCTGTCGATGAACAGCAGCTCCAAGGGATTGATCTCAATTCTCCTTCTTCTAGTAGATGTGCCAATGGAAGCCCAGACGGTTCGTCGTCAACGCCTCATGTTAGATCTACGCCAAATAGTTTGATTATCTTAATTCTCAGTTGTACTATCGCTGCCGGTGTTCAATTTGGTTGGGCATTACAGCTCTCCTTACTAACTCCCTATATTCAGACACTTGGAATCGAGCATGCATTTTCTTCGTTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGTTCAACCATGTGTTGGTATATGGAGTGATAAGTGTTCTTCAAAGTATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCTTTAATGATAGCAGTAGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATACTAGGAGATACGAAGGAACATTGCAGAGTATATAAGGGTACACGAACAAGGGCAGCTATTATTTTTGTAATAGGCTTTTGGATGCTTGATCTTGCAAACAATACAGTGCAGGGTCCTGCCCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCAGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTCCTTTTGAGTGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTATCGCTGTGGTTTTTCTAACCATATGTACTCTTGTTACCATATATTTTGCCCATGAAGTTCCACTTACTGCTGTAGATCAACTACCACGTTTATCAGATTCTGCTCCTCTGTTGAATGGGAATGAACAAAGTAGTCCTAATATTGTAAAATCGGAGCTTAACAGTCCAAATGGGAGCAATGACAACTATGGCTATCAAAAAGATGTGAATTTGGAAATTTCAAAATCAATAATTGAGGAAAATCACAGTGAAAGTTATTACGATGGTCCTGCAACAGTGGTAGTCAAATTGTTAACCAGTTTAAGGCATTTACCACCGGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGCTGGTTATCCTGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTACCATGGGGACCCAAAAGGAAGTTTGACTGATGAACAGGTGTATGATCAGGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTCATAGAGCCGATGTGTCAGCGCATGGGAGCAAGACTTGTCTGGGCAATAAGCAACTTTATTGTGTTTGCATGCATGACGGGAACTACTATTATCAGTTTAATATCTGTCAGCCAATACTCTGAAGGAATCGAACACGTTATAGGAGGAAACTCAACAATAAAAAATGCTTCCTTGGCTGTTTTTGTTCTTCTTGGTTTTCCTCTTGCTATAACTTATAGCGTTCCCTTCTCTTTGACAGCAGAATTGACTGCTGATTCTGGTGGTGGCCAAGGATTGGCTATAGGAGTTCTCAATCTTGCAGTTGTTATTCCCCAGATGATTGTATCACTGGGTGCTGGGCCATGGGATGCATTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTGGCTTCTGTTTGTGCGCTTGCGGCTGGAGTTGTTGCGCTTCTTAGATTGCCTGATCACACCAACAGTTCTTTCAAATCCACAGGTTTTCATTTTGGTTGA 1815 42.64 MVGKPSSVSFRVPYRNLQDAEVEMVAVDEQQLQGIDLNSPSSSRCANGSPDGSSSTPHVRSTPNSLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSDACCEACGNLKAAFLIAVVFLTICTLVTIYFAHEVPLTAVDQLPRLSDSAPLLNGNEQSSPNIVKSELNSPNGSNDNYGYQKDVNLEISKSIIEENHSESYYDGPATVVVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLTDEQVYDQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAISNFIVFACMTGTTIISLISVSQYSEGIEHVIGGNSTIKNASLAVFVLLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNIPAFALASVCALAAGVVALLRLPDHTNSSFKSTGFHFG 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4506858 4512711 - CmaCh12G007370.1 Cma12g00737 305227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00737 604 MobiDBLite consensus disorder prediction 306 330 - -
Cma12g00737 604 MobiDBLite consensus disorder prediction 36 59 - -
Cma12g00737 604 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 39 604 - -
Cma12g00737 604 PANTHER SUGAR TRANSPORTER 39 604 - -
Cma12g00737 604 SUPERFAMILY MFS general substrate transporter 54 591 IPR036259 -
Cma12g00737 604 CDD MFS_SLC45_SUC 69 586 - -
Cma12g00737 604 Pfam Major Facilitator Superfamily 78 393 IPR011701 GO:0022857|GO:0055085
Cma12g00737 604 Gene3D MFS general substrate transporter like domains 62 587 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00737 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101205348 1071.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00228 Cma-Chr12:1123406 Cma12g00737 Cma-Chr12:4506858 1.59E-151 dispersed
Cma12g00737 Cma-Chr12:4506858 Cma05g00896 Cma-Chr5:6943697 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g00472 . 11 485 Sucrose Transporter Gene Family AT1G22710 63.3 2.3e-180 629.4
Cma05g00857 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.7 2.3e-177 619.4
Cma05g00865 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.7 2.3e-177 619.4
Cma12g00228 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.2 4.8e-138 488.8
Cma01g00472 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 9.1e-179 624.0
Cma05g00857 . 19 481 Sucrose Transporter Gene Family AT2G14670 62.6 4.8e-172 601.7
Cma05g00865 . 19 481 Sucrose Transporter Gene Family AT2G14670 62.6 4.8e-172 601.7
Cma12g00228 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 1.1e-134 477.6
Cma01g00472 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.4e-149 526.9
Cma05g00857 . 19 411 Sucrose Transporter Gene Family AT1G66570 60.5 3.4e-143 505.8
Cma05g00865 . 19 411 Sucrose Transporter Gene Family AT1G66570 60.5 3.4e-143 505.8
Cma12g00737 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.3 2.3e-184 642.5
Cma05g00896 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.6 7.3e-178 620.9
Cma01g00472 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 4.1e-163 572.0
Cma05g00857 . 13 481 Sucrose Transporter Gene Family AT5G06170 59.7 1.3e-161 567.0
Cma05g00865 . 13 481 Sucrose Transporter Gene Family AT5G06170 59.7 1.3e-161 567.0
Cma01g00472 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.6e-175 613.2
Cma05g00857 . 19 481 Sucrose Transporter Gene Family AT5G43610 62.2 6.6e-169 591.3
Cma05g00865 . 19 481 Sucrose Transporter Gene Family AT5G43610 62.2 6.6e-169 591.3
Cma12g00228 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 1.4e-131 467.2
Cma12g00228 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.6 2.0e-205 712.6
Cma05g00857 . 13 491 Sucrose Transporter Gene Family AT1G09960 50.9 1.9e-131 466.8
Cma05g00865 . 13 491 Sucrose Transporter Gene Family AT1G09960 50.9 1.9e-131 466.8
Cma01g00472 . 19 480 Sucrose Transporter Gene Family AT1G09960 50.7 4.5e-128 455.7
Cma01g00472 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 6.0e-173 604.7
Cma05g00857 . 19 497 Sucrose Transporter Gene Family AT1G71880 60.1 8.1e-170 594.3
Cma05g00865 . 19 497 Sucrose Transporter Gene Family AT1G71880 60.1 8.1e-170 594.3
Cma12g00228 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.6 1.7e-135 480.3
Cma01g00472 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 1.7e-167 586.6
Cma05g00857 . 19 497 Sucrose Transporter Gene Family AT1G71890 59.3 1.4e-166 583.6
Cma05g00865 . 19 497 Sucrose Transporter Gene Family AT1G71890 59.3 1.4e-166 583.6
Cma01g00472 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 6.0e-173 604.7
Cma05g00857 . 19 497 Sucrose Transporter Gene Family AT1G71880 60.1 8.1e-170 594.3
Cma05g00865 . 19 497 Sucrose Transporter Gene Family AT1G71880 60.1 8.1e-170 594.3
Cma12g00228 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.6 1.7e-135 480.3
Cma01g00472 . 11 485 Sucrose Transporter Gene Family AT1G22710 63.3 2.3e-180 629.4
Cma05g00857 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.7 2.3e-177 619.4
Cma05g00865 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.7 2.3e-177 619.4
Cma12g00228 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.2 4.8e-138 488.8
Cma12g00737 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.3 2.3e-184 642.5
Cma05g00896 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.6 7.3e-178 620.9
Cma12g00228 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.6 2.0e-205 712.6
Cma05g00857 . 13 491 Sucrose Transporter Gene Family AT1G09960 50.9 1.9e-131 466.8
Cma05g00865 . 13 491 Sucrose Transporter Gene Family AT1G09960 50.9 1.9e-131 466.8
Cma01g00472 . 19 480 Sucrose Transporter Gene Family AT1G09960 50.7 4.5e-128 455.7
Cma01g00472 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 1.7e-167 586.6
Cma05g00857 . 19 497 Sucrose Transporter Gene Family AT1G71890 59.3 1.4e-166 583.6
Cma05g00865 . 19 497 Sucrose Transporter Gene Family AT1G71890 59.3 1.4e-166 583.6
Cma01g00472 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.6e-175 613.2
Cma05g00857 . 19 481 Sucrose Transporter Gene Family AT5G43610 62.2 6.6e-169 591.3
Cma05g00865 . 19 481 Sucrose Transporter Gene Family AT5G43610 62.2 6.6e-169 591.3
Cma12g00228 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 1.4e-131 467.2
Cma01g00472 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.4e-149 526.9
Cma05g00857 . 19 411 Sucrose Transporter Gene Family AT1G66570 60.5 3.4e-143 505.8
Cma05g00865 . 19 411 Sucrose Transporter Gene Family AT1G66570 60.5 3.4e-143 505.8
Cma01g00472 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 9.1e-179 624.0
Cma05g00857 . 19 481 Sucrose Transporter Gene Family AT2G14670 62.6 4.8e-172 601.7
Cma05g00865 . 19 481 Sucrose Transporter Gene Family AT2G14670 62.6 4.8e-172 601.7
Cma12g00228 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 1.1e-134 477.6
Cma01g00472 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 4.1e-163 572.0
Cma05g00857 . 13 481 Sucrose Transporter Gene Family AT5G06170 59.7 1.3e-161 567.0
Cma05g00865 . 13 481 Sucrose Transporter Gene Family AT5G06170 59.7 1.3e-161 567.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00737 Cma_Chr12 FPKM 8.223462 9.532806 7.940089 8.376024 8.24594 7.672634 8.144278 7.949967 8.262709 9.029339