Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00787 ATGGGCATCGTGGACGGAGGCACTCAATCTCAGTCTGCAAATCCGAACATGGGAAGAGAAAAGCCGAAGGTGGTCGTGATTATGGGGCCGACTGGTTCTGGGAAGTCACGTCTCGCCATCGATTTGGCTTCTTACTTCCCCGTCGAGATCATCAACGCCGATTCTATGCAGGTTTATCGCGGCTTGGACGTTCTCACAAACAAAGTTCCTCCCCAAGACCAAAATGGAGTACCGCATCATCTTTTAGGTACAGTGAGTCCAGACGTTGAATTCACGGCTAAAGACTTCCGAGATTCTGCCATTCCTGTTATTGATGACATATTATCACGTGGATGCTTGCCAATGATAGTGGGTGGAACGAATTATTATATACAGGCTCTTTTTAGCCCACTTCTTCTGGATGATTCTGCTAAAAATATCGGCGGAAGTTGCTCCAGTTATCTTGGAGACGAGGAGATGGATATTGAGTTGGATGAGGGAAGAGATAGTTTGAAGTATGACCATAGCTATCTTAAAGAGATTGATCCAGTTTCGGCTGGTAGACTCCATCCGAATAACCACCGAAAAATAAATCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGGAAGGCTGCTGAGAGTTGGGGTCAAGCTGATAGTTTCAGATACGAGTGCTGCTTGATATGTGTCGATGCTTCTATTCCACAAATTGATGGACATGTTGATTCTAGAGTTGATAGCATGTTGGCTGCTGGATTACTTGATGAGGTCTATGATATTTACAATCCAAATGCGAACTATACTAGAGGATTGTGGCAAGCGATTGGTGTTCGGGAGTTTGAAGAGTTTTTAAGGTATTATGTACCTAACGGTAGATGCGACGAAGATAGCAATGAGCTTAGTCCAAAAAATTCAATGGAGTGTAATGAGATTTTGAAAGAGAATATGAGGTCCATCCTAAATTCAACAAGTGCTGGCGAATCCAGTTTGCTACTGAAAGAAGCCATAGATAATGTAAAGTTAAATACTAGAAGATTGGTTCGTCGCCAGCGGAGGCAGATAAAGAGACTGGAAACTTTGTTTGGATGGAAGATCCACTATGTTGATTCCACTGAATATATAACAAGCAAAATGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCAGTCCAGATAATTAAGTCGTTCCTTGAAGATTGCTGTTCGGCGACTGGGAAAATGAACCCACAGAGTTCTGGGCAAACAATCAAAAAGGACTTGTGGACACAATATATTTGCCAGGCTTGTGGGAACAAACTACTAAGAGGAGCACATGAATGGGAACAACACAATCTAGGTCGCTCGCATCGAAAGCGAATGTATCGGCTTAAGAAGCGTGAAGGGTCGTCTTTCCTGCAACAGAAACTACCTCAAGAGTAA 1425 43.37 MGIVDGGTQSQSANPNMGREKPKVVVIMGPTGSGKSRLAIDLASYFPVEIINADSMQVYRGLDVLTNKVPPQDQNGVPHHLLGTVSPDVEFTAKDFRDSAIPVIDDILSRGCLPMIVGGTNYYIQALFSPLLLDDSAKNIGGSCSSYLGDEEMDIELDEGRDSLKYDHSYLKEIDPVSAGRLHPNNHRKINQYLSLYYRTGVLPSTLFQGKAAESWGQADSFRYECCLICVDASIPQIDGHVDSRVDSMLAAGLLDEVYDIYNPNANYTRGLWQAIGVREFEEFLRYYVPNGRCDEDSNELSPKNSMECNEILKENMRSILNSTSAGESSLLLKEAIDNVKLNTRRLVRRQRRQIKRLETLFGWKIHYVDSTEYITSKMEDSWTAQVVEPAVQIIKSFLEDCCSATGKMNPQSSGQTIKKDLWTQYICQACGNKLLRGAHEWEQHNLGRSHRKRMYRLKKREGSSFLQQKLPQE 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5457394 5474757 + CmaCh12G007870.1 Cma12g00787 305277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00787 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 400 - -
Cma12g00787 474 Hamap tRNA dimethylallyltransferase [miaA]. 24 400 IPR018022 GO:0008033
Cma12g00787 474 Gene3D Classic Zinc Finger 424 465 - -
Cma12g00787 474 Gene3D - 22 423 IPR027417 -
Cma12g00787 474 MobiDBLite consensus disorder prediction 1 21 - -
Cma12g00787 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 131 IPR027417 -
Cma12g00787 474 MobiDBLite consensus disorder prediction 1 17 - -
Cma12g00787 474 Gene3D - 150 211 - -
Cma12g00787 474 TIGRFAM miaA: tRNA dimethylallyltransferase 24 287 IPR018022 GO:0008033
Cma12g00787 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 400 IPR039657 -
Cma12g00787 474 Pfam IPP transferase 57 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00787 Cma-Chr12:5457394 Cma06g01439 Cma-Chr6:9238950 3.77E-19 dispersed
Cma16g00419 Cma-Chr16:2095194 Cma12g00787 Cma-Chr12:5457394 2.84E-23 dispersed
Cma12g00787 Cma-Chr12:5457394 Cma08g00358 Cma-Chr8:2053360 3.86E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00787 K00791 - csv:101202758 780.4