Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00807 ATGCCGATCTCTCCATCCCTTCAACTCCTTCGATTTCCTTCCCAGGCACTATCCTCATCCTCTCACCACCGTCTCATCTCTGATCTTGCCTCTGAATCGCTTTTCTTCCGATCTCCATGGCTTGCCTCTTTGGCTCCGCTGCGGAACTGCCGGATGAAGTTATCTTCGACTACGAAATGTTTCTCCATGTCCAATGAGGATGAGAATTGGAGTGATTCGGAAGCGTTGGTGTCCGATTTGGACGAAGGGGGAGATCGCGAGGATGATATTGGTGTTCAGCAAGAGAATCCTGTGGCCACTGTTGCTTCTGCGCAGACGATTGCTTCCTCGTCGCCGAGTGATTATCTGTCGCTGGCGATCCGAGAGCTGGTTTATGAGGTGGTAGAGGTTAAAGCCAATGGAGCCATATCCACTAGGAAGATTAACAGACGCCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTTCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTTCGTGAACATGCTATTTTGCTTAATCTGGGTTCGCTTCGAGCAATAGCTATGCGGGATTGTGTCCTTATATTTGATTATAACCGTCCTGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGCGCCAGAAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACACAGCGTTTTGAAAAGCGACTAATGAAAGTAGAACCTCGTGTTCGAGCTCTACTTGAGGTATTGCCCAACAAATTAACTGCTACTGGGTTGGAACAACTTCGTATTAGCAAGCAAACTTTGGTTGAATTAGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCACAAGAAATACGACGTATCTGCATTATGGGAAGAAATTGCACTCTTAATAAGAGAAGTGATGTTGTGGAGTGCTCTGTTCCGATGGATAAGCAGATTGCAGATGAAGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCTGAGATGTGAATCTTGTCATGGTCAAGCTGAAAGGCTTCTGGATTCTGCTAAAGAAATGGAAGATTCAATTGCCGTCAATTTGAGCTCGCGGCGACTTGAGGTTAGCAGGGTGGAATTGCTTCTTCAAGTTGGGACATTTTGTGTGGCTGTTGGTGCTTTAGTTGCAGGAATATTTGGCATGAACTTACGATCTTACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATTATTGTGGGTTCGGTTGTGGCATTCTTTCTCGTGTATTCATATTTCAGAGATAGGAGAATCCTATAA 1365 44.84 MPISPSLQLLRFPSQALSSSSHHRLISDLASESLFFRSPWLASLAPLRNCRMKLSSTTKCFSMSNEDENWSDSEALVSDLDEGGDREDDIGVQQENPVATVASAQTIASSSPSDYLSLAIRELVYEVVEVKANGAISTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMRDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGAPEMPFELEVVEAALLSRTQRFEKRLMKVEPRVRALLEVLPNKLTATGLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRSDVVECSVPMDKQIADEEEEEIEMLLENYLLRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGSVVAFFLVYSYFRDRRIL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5843592 5856762 + CmaCh12G008070.1 Cma12g00807 305297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00807 454 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 40 454 - -
Cma12g00807 454 CDD Mrs2_Mfm1p-like 127 453 IPR039204 -
Cma12g00807 454 Gene3D - 118 201 - -
Cma12g00807 454 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 40 454 IPR039204 -
Cma12g00807 454 Gene3D Magnesium transport protein CorA, transmembrane region 204 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00807 Cma-Chr12:5843592 Cma04g00540 Cma-Chr4:2745971 5.26E-22 dispersed
Cma12g00807 Cma-Chr12:5843592 Cma13g00268 Cma-Chr13:2193822 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00807 K16075 - csv:101219314 710.679