Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00818 ATGAATCAGCTGAAGAGGTGGGGGTTTGAATTTGAGGGATTTGGGGATAAAGTGGGAGGCAAGAAGAGGGGAATATTGGGGTCTTTTGATTTCCTACCTGGCGGAGTTTACCAAGAGACTTTGTTTGTGTTGAGAGTTTGGGGATTTGGGGAAATGGCCATGGCTATGGCTACGGCCCATCACAGAGAGAGTGGCGATGGGGGTATCGATGGCCACCTTGATAGCACCGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAAGCTCTTGAGCGAGTTTATGCGGAATGTCCTAAACCGAGCTCTTTGCGGCGGCAGCAGCTAGTTCGTGATTGCCCCATTTTGGCTAACATCGAGCCAAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAGAAACAGAGGAAAGAGGCTTCTCGTTTACAGTCATTGAATAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAACGATAGGTTACAGAAACATGTGTCTCAGCTCATTTGTGAGAATGGGTCTATGCGACAACATTTGCAAACTGCTAACGCACCAGCAGCACCAGTTACTGATGCAAGCTGTGACACAGTGGCTACTACCCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCCTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTACAGGAACTGCTATCGATTGGGTCCAGTTGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTCGCCGTTTCACAGAGTTGCAGTGGAGTAGCGGCTCGTGCCTGTGGTCTTATTGACGAGATCCTTAAAGATCGCCCATCTTGGTTTCGTAATTGCCGGAGCGTTGAAGTCTTTACAATGTTTCCCACTGGTAATGGTGGGACGATCGAACTTGTTTATACGCAGGTTTACGCTCCGACTACGCTAGCACCTGCACGAGATTTTTGGACTCTAAGATACACGAAAACTTTGGAAAATGGAAATCTTGCGGTTTGTGAGAGATCGCTGTCTGGGTCAGGCGCGGGGCCTAATTCAGCTTCTGCTGCTCAGTTCGTGCGAGCTGAAATGCTTCCCAGTGGTTATTTGATTCGTCCTTGTGATGGCGGAGGTTCAATCATCCACATTGTAGATCACCTAAATCTCGAGCCTTGGAGCGTGCCAGAGGTCGTGAGACCACTTTACGAATCGTCAAAGGCCGTCGCTCAGAAAATGACTATAGCAGCTTTTCTCTACGTCAGGCAAGTGGCTCAAGAAACAAGTGGTGAAGTAGTATACAGTTTAGGCAGACAACCGGCCGTTCTTCGAACGTTTAGCCAAAGATTAAGCAGAGGATTTAATGAGGCTGTTAATGGATTTAATGATGATGGATGGTCTTTGATGAACTATGATGGAGCTGAAGATGTGAGTCTTGCCATAAATTCAAGCAAGAATGTAAATACATCGTATGATCCTGTCAACTCTCTTGCATTCCATGCGGGTGTTCTTTGTGCAAAGGCTTCCATGCTTATACAAAATGTTCCTCCAATTGCTTTAATTCGTTTCTTGAGGGAACATCGATCGGAGTGGGCTGATTTCAATGTTGATGCGTATTCCGCTGCGTCGTTGAAAACTGGTTCGTATGTATACCCGGGCATGAGACCGACCAGGTTTACAGGGAGCCAAATCATCATGCCGCTCGGCCATACAATCGAACAAGAAGAGATGTGTACTGGAATCGATGAGAATGCAGTTGGAGCGTGTTCCGAACTTGTGTTTGCTCCAATCAATGAGATGTTTCCTGATGATGCTGTATTGCTGCCTTCTGGTTTTAGGATCATCCCTCTACATTCTGAAACAGGTGACTCAAAACATACATGGAAGAACTTGAATAGCACTATGGATCTCACTTCCAATCTTGAAGTTGGTTCATCTGCTTCACAAGATGCTGCTGCTGCATCAACATCTAACTTCAGATCAGTTTTGACTATTGCCTTCCAGTTCTCGTTTGGTAGCAACCTACAGGATGATGTTGCGGCGATGGCAAGGCAGTACGTTCGGAGTGTCGTTTCAGCTGTGCAGAGGGTTGCAGTTGCCATGTCTCCCTCTGGATTAAGCTTGCCATCGGAACGAAGGCTATCATCTGCTTGTCCAGAAGCTCTTACCCTGGCTCGATGGATCTGCTATAGCTACAGATGCCATACTGGAACAGAATTGGTGCTATCAGACAGTGTGGATGGTGGTGACTCAGTGTTGAAACACCTATGGAATCATCAGGATGCAATTCTCTGTTGTTCCCTCAAGTCACTGCCCCCAGTGTTCATGTTTGCAAACCAAGCAGGCCTCGACATGTTGGAGACGACCTTGGTTGCGTTGCAAGACATCACTTTGGATAAGATTCTCGGCGACTCGGCCCATAAGGCCTTCTCTGCTGATTTTTCCAATTTAATGCACCAGGGCTTTGCTTACATACCTGCTGGAATTTGCATATCGACAATGGGGCGCCATGCTTCCTTTGAACAAGCCATTGCATGGAAGGTTCTTGCAGAAGACGAGTCCACCGTGCACTGTCTTGCTTTCTCCTTCGTCAACTGGTCGTTCCTATGA 2604 47.62 MNQLKRWGFEFEGFGDKVGGKKRGILGSFDFLPGGVYQETLFVLRVWGFGEMAMAMATAHHRESGDGGIDGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKHVSQLICENGSMRQHLQTANAPAAPVTDASCDTVATTPQHSLRDASSPAGLLSIAEEILAAFLSKATGTAIDWVQLPGMKPGPDSVGIFAVSQSCSGVAARACGLIDEILKDRPSWFRNCRSVEVFTMFPTGNGGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLAVCERSLSGSGAGPNSASAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVVRPLYESSKAVAQKMTIAAFLYVRQVAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNEAVNGFNDDGWSLMNYDGAEDVSLAINSSKNVNTSYDPVNSLAFHAGVLCAKASMLIQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYVYPGMRPTRFTGSQIIMPLGHTIEQEEMCTGIDENAVGACSELVFAPINEMFPDDAVLLPSGFRIIPLHSETGDSKHTWKNLNSTMDLTSNLEVGSSASQDAAAASTSNFRSVLTIAFQFSFGSNLQDDVAAMARQYVRSVVSAVQRVAVAMSPSGLSLPSERRLSSACPEALTLARWICYSYRCHTGTELVLSDSVDGGDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKILGDSAHKAFSADFSNLMHQGFAYIPAGICISTMGRHASFEQAIAWKVLAEDESTVHCLAFSFVNWSFL 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5996218 6001652 + CmaCh12G008180.1 Cma12g00818 305308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00818 867 SUPERFAMILY Bet v1-like 219 403 - -
Cma12g00818 867 Pfam START domain 220 416 IPR002913 GO:0008289
Cma12g00818 867 Gene3D - 248 426 IPR023393 -
Cma12g00818 867 CDD bZIP 130 166 - -
Cma12g00818 867 SMART START_1 219 422 IPR002913 GO:0008289
Cma12g00818 867 Gene3D - 72 144 - -
Cma12g00818 867 Pfam Homeodomain 79 136 IPR001356 GO:0003677
Cma12g00818 867 ProSiteProfiles 'Homeobox' domain profile. 73 137 IPR001356 GO:0003677
Cma12g00818 867 SMART HOX_1 75 141 IPR001356 GO:0003677
Cma12g00818 867 CDD homeodomain 78 138 IPR001356 GO:0003677
Cma12g00818 867 Pfam MEKHLA domain 721 866 IPR013978 -
Cma12g00818 867 ProSiteProfiles START domain profile. 210 404 IPR002913 GO:0008289
Cma12g00818 867 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 54 867 IPR044830 GO:0003700
Cma12g00818 867 Coils Coil 143 174 - -
Cma12g00818 867 SUPERFAMILY Homeodomain-like 76 140 IPR009057 -
Cma12g00818 867 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 54 867 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00818 Cma-Chr12:5996218 Cma20g00486 Cma-Chr20:2354639 0 dispersed
Cma12g00818 Cma-Chr12:5996218 Cma02g00895 Cma-Chr2:5310591 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36019 PF01852 START 9.60E-40 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00818 K09338 - cpap:110820480 1258.43