Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00827 ATGGGTGTGGTTGAAGAGTACTTGCCAGCAATGGCGATGTTGGGAATTCAAGCAATTTATGCCATTGTCACACTCATCTCTAGGGCTGCCCTGTTGGAGGGTATGAGTCCTAGAGTGTTCATCGTTTATAGGCAGGCCTTTGCCACTCTCTCTATTGCACCCATTGCTTATCTCTCCAGGTCGAAATCCATGAAGGTGTCTTTGGACCTCAAGAGCTTTTATCTCATCTTTTTTGCTGCACTTATCGGTTCAACCATGAACCACAATTTTTTCTACGAGGGACTGTTCTTAGCCAGTTCATCATTAGCAACCGCGATGGAGAATCTGATTCCGGCAGTGACATTTATAATAGCAGCAATGGTCGGAATGGAGAGCGTGAAGCTGACAAACTTGAGGTGCATGGCTAAGATTGGAGGTACAGTGGTTTGTGTGGGTGGGGCTATGTTCATGGCCCTTCTAAGAGGTCCAAAGCTTCTGAATGCCACACAAGCTTTTGGTGTCAAATCTGCAATATTTGGTGTGGAAAGTGGAAGCGATGAGGCTTGGTTGTTGGGGTCACTCAGTCTGTTTGGGAGCTGTTGCTGTTGGTCAATTTGGTTGATATTGCAGGTGCCGGCAATGGCAAGCTATCCTGACAAGCTATCCTTATCGGCATGGACTTGTTTTTTTTCACTCATACAATCAGTGGGTTTCACATTATGGGTAGAGGGAGCCAATGTGGAAACGTGGAAGATTCATTCAAAGACTGAACTTGTTTGTTACCTGTTCTCAGGGATTTTTGGGTCAGGAGTTGCCTACTTTCTTCAAGCTTGGGGTATTTCCAAGAGGGGACCTGTCTTCTCTGCAGTGTTCAACCCTTTTTGCACCATTATTACCACTATTTTGGCAGCTATATTTCTTCATGAGGAGATTTATACCGGAAGCTTGTTGGGGGGCGTGATTGTAATTATTGGATTATATGTGGTTCTTTGGGGGAAAACAAATGATTATACGAAGGAAGAAGACAGAGAAAAGTGTAGAGTTGAAACACAAGAAGAGGATTGTGAATCAGCTTCAACTTCGATTGAGACAGATAGCTATAAAGTTGATGTGAGGGAACCCCTTTTGTCGTCTGGGTGTACACATCATATTGACAGCTAG 1140 44.3 MGVVEEYLPAMAMLGIQAIYAIVTLISRAALLEGMSPRVFIVYRQAFATLSIAPIAYLSRSKSMKVSLDLKSFYLIFFAALIGSTMNHNFFYEGLFLASSSLATAMENLIPAVTFIIAAMVGMESVKLTNLRCMAKIGGTVVCVGGAMFMALLRGPKLLNATQAFGVKSAIFGVESGSDEAWLLGSLSLFGSCCCWSIWLILQVPAMASYPDKLSLSAWTCFFSLIQSVGFTLWVEGANVETWKIHSKTELVCYLFSGIFGSGVAYFLQAWGISKRGPVFSAVFNPFCTIITTILAAIFLHEEIYTGSLLGGVIVIIGLYVVLWGKTNDYTKEEDREKCRVETQEEDCESASTSIETDSYKVDVREPLLSSGCTHHIDS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6097076 6100160 + CmaCh12G008270.1 Cma12g00827 305317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00827 379 PANTHER WAT1-RELATED PROTEIN 10 347 - -
Cma12g00827 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 326 - -
Cma12g00827 379 Pfam EamA-like transporter family 11 131 IPR000620 GO:0016020|GO:0016021
Cma12g00827 379 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
Cma12g00827 379 PANTHER WAT1-RELATED PROTEIN 10 347 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00430 Cma12g00827 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00661 Cma-Chr5:3380559 Cma12g00827 Cma-Chr12:6097076 0 dispersed
Cma12g00827 Cma-Chr12:6097076 Cma15g01342 Cma-Chr15:8415672 7.10E-71 dispersed
Cma12g00827 Cma-Chr12:6097076 Cma12g00828 Cma-Chr12:6131766 1.27E-135 tandem
Cma11g00430 Cma-Chr11:2109687 Cma12g00827 Cma-Chr12:6097076 1.64E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00827 - - cmax:111468623 724.931