Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00858 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGCGAAAAATTCGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCGCCTTCTGATAGTGGGATAAGAAGATGTGGTTTGAATATAGATGGATTTAACCGTGCAGTCCATGGAAATGATAAGCCATCTGGATCCTTTAAGAGAGGAATGAGAAAAGGGTCCGAAGGACTTAAATCAATTGGTCGATCACTCAAGTTTGGAGTATCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAGATCTTTGATCCTCAAGACAAATTGCTCTTATTCTTGAATAAACTTTTTGTCATATCATGTTTTTTAGCAATATCGGTGGACCCGCTATTCTTTTATGTTCCTGTCATTAACCAACAGTCGAGCTGTCTTGGCATTGATAGGAAGCTGGCAATTACAGTGACAACATTGCGAACAGTTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAAAGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTCTGGAGATTTCTTCAGAGGTCCAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTTTCATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTACCATTGACTTCAGAATTGAAAAGGACAACAGGCGTATTTGCAGAAACAGCCTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCACTGTGGTACTTATTAGCTGTGGAACGCAATGACACATGTTGGCAGAAGTATTGTAGTGCCCCTTGCAGGAAAAATTTCTTATATTGCGGTAACCAAGACATGGAGGGCTATTCGACTTGGAACCAGACAGGTGTGGATGCCCTAATGTCGAGATGCAAACCTGCTGATGATAATGATTCGTTTGATTTTGGAATCTTTAAACAGGCTTTGTCCTCTGGCATTGCGGCATCCAAGAATTTTGTCGGCAAATATTGTTACTGTCTATGGTGGGGCCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTATCCGGCTGAAGTGATCTTTTCTATAGCATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACCATAAGGCTTGAGGAAATGAGGGTGAAAAAGCGTGATTCGGAGCAATGGATGCATCATCGTTTGCTGCCACAGGAACTTCGAGAGAGAGTCAGGCGATATGATCAGTACAAGTGGTTGGAGACCCGCGGAGTCGACGAACAGAGTTTGGTTCAAACTCTCCCTAAGGATCTTAGGAGAGATATTAAGCGACATCTTTGTCTCGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGATGAGAGGCTGCTTGATGCTATTTGTGAGCGGCTAAAACCGTGTTTGTTTACAGAGTACACTTACATAGTCCGTGAGGGTGATCCAGTCGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACCGATGGTGGGCGGAGCGGATTTTTCAATCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACTTGGGCTCTTGACCCGAAATCTGGTTCGAATCTTCCATCTTCGACAAGGACGGTAAAGGCTATTACAGAGGTTGAGGCTTTCGCGCTTGTTGCTGAAGAGTTGAAATTCGTAGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTTCGATTCTACTCGCAGCAATGGAGGACCTGGGCTGCTTGCTTCATCCAAGCAGCATGGCGCCGATACTCCAAGAGAAAGACTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCGGAGGAATCCAAGACATCTCAAACGACGACCACAAGCGGAGGAGGCTCTTACAGTATTCGTGCAACTTTCCTAGCTTCTAAATTTGCTGCCAATGCTCTCCGAGGCGTTCAGCGATATCGCAACGCAAAGAGCGCTCAGGAGTTGATAAAATTGCAGAAGCCTCCCGAGCCCGATTTTAGCGCAGATGATGCCGATTGA 2208 44.25 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGIRRCGLNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCFLAISVDPLFFYVPVINQQSSCLGIDRKLAITVTTLRTVIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLFIVFLQYIPRFLRALPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCSAPCRKNFLYCGNQDMEGYSTWNQTGVDALMSRCKPADDNDSFDFGIFKQALSSGIAASKNFVGKYCYCLWWGLQNLSTLGQGLQTSTYPAEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELRQKEEVAAEESKTSQTTTTSGGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6341807 6364605 + CmaCh12G008580.1 Cma12g00858 305348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00858 735 CDD CAP_ED 504 635 IPR000595 -
Cma12g00858 735 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 732 - -
Cma12g00858 735 Pfam Cyclic nucleotide-binding domain 529 614 IPR000595 -
Cma12g00858 735 SMART cnmp_10 504 635 IPR000595 -
Cma12g00858 735 SUPERFAMILY cAMP-binding domain-like 434 624 IPR018490 -
Cma12g00858 735 Gene3D Jelly Rolls 502 622 IPR014710 -
Cma12g00858 735 Pfam Ion transport protein 109 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma12g00858 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 732 - -
Cma12g00858 735 Gene3D Helix hairpin bin 432 495 - -
Cma12g00858 735 SUPERFAMILY Voltage-gated potassium channels 101 426 - -
Cma12g00858 735 ProSiteProfiles IQ motif profile. 640 669 IPR000048 GO:0005515
Cma12g00858 735 Gene3D - 111 429 - -
Cma12g00858 735 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma12g00858 735 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma12g00858 735 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma12g00858 735 PRINTS EAG/ELK/ERG potassium channel family signature 373 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma12g00858 735 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma12g00858 735 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma12g00858 735 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma12g00858 735 ProSiteProfiles cAMP/cGMP binding motif profile. 504 588 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01051 Cma-Chr11:5778938 Cma12g00858 Cma-Chr12:6341807 0 dispersed
Cma12g00858 Cma-Chr12:6341807 Cma20g00493 Cma-Chr20:2405631 0 dispersed
Cma16g00064 Cma-Chr16:278135 Cma12g00858 Cma-Chr12:6341807 9.33E-24 dispersed
Cma10g00428 Cma-Chr10:1952298 Cma12g00858 Cma-Chr12:6341807 0 wgd
Cma11g00421 Cma-Chr11:2074262 Cma12g00858 Cma-Chr12:6341807 0 wgd
Cma12g00858 Cma-Chr12:6341807 Cma05g01038 Cma-Chr5:8307756 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00858 K05391 - csv:101219180 1348.57