Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00875 ATGATAAACAAAAAACGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCGAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCATAAGAGCACCCTCTGTATGTCGTCTACACACACCAAGTTATGGTACACATCCCATTGCTACTTTTTCCCCGGCATCACCAGTGAAATATTGGAACACTATCCCTCCTACATCTCTTGCCTATCTGTCAAACCCTCGATTCTATTCATCGACTTCTAGCAGGAAAGCGGATATTACTGGAGATACTGGTGTTCCACTAGCTTCTTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGCTGGCAGAGTGCTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGATCTTAGATTCACATCCATATCTGAAGAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCTATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGAGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAGTTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTTCGAGGGATATACTTGGGAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAATAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATTTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAGGTCTCACCCTAAGGTATTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCAAATTGAAAAGCAAGATATTCTCCTCCAGTCAGTACAGATCATCAAAGAAAATGGTGCAACCTTGGGTAACTGA 1518 42.36 MINKKRASKSYLNPCSFQYCKSYTKISEYVNRVLRPSVVLNKQYYKDESHSLKNVSRTGFIRAPSVCRLHTPSYGTHPIATFSPASPVKYWNTIPPTSLAYLSNPRFYSSTSSRKADITGDTGVPLASSGVEADISNPPDVGRDWLERVKDGWQSAVDAASFTGQKAREVSDEFSPHVDKILDSHPYLKNEIAPVGMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSTSIEEIPYEKSFWGALEDPLRYLVTFYAFSQIGKMVAPTAIASEFVSQACRGAVILSLVWFIYRWKTNVFSRALASQNFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFASRDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVIEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPFQVADFSTVSKISDDIKSMLRSHPKVFLGKEAPYCFLSQIEKQDILLQSVQIIKENGATLGN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6573278 6577896 - CmaCh12G008750.1 Cma12g00875 305365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00875 505 Gene3D - 277 379 - -
Cma12g00875 505 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 89 504 - -
Cma12g00875 505 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 89 504 - -
Cma12g00875 505 Gene3D - 381 429 IPR023408 -
Cma12g00875 505 SUPERFAMILY Sm-like ribonucleoproteins 365 430 IPR010920 -
Cma12g00875 505 Pfam Mechanosensitive ion channel 323 479 IPR006685 GO:0016020|GO:0055085
Cma12g00875 505 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 282 363 IPR011014 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00875 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101220483 776.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00875 Cma-Chr12:6573278 Cma16g00747 Cma-Chr16:3999600 4.88E-10 dispersed
Cma12g00875 Cma-Chr12:6573278 Cma05g00546 Cma-Chr5:2650712 7.93E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00875 . 144 504 Mechanosensitive Ion Channel Family AT4G00290 64.8 9.3e-139 491.1
Cma16g00747 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 58.6 2.3e-196 682.9
Cma05g00546 . 10 704 Mechanosensitive Ion Channel Family AT5G10490 55.5 8.3e-191 664.5
Cma12g00199 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 57.4 1.2e-189 660.6
Cma05g00546 . 10 684 Mechanosensitive Ion Channel Family AT1G58200 57.4 1.8e-201 699.9
Cma12g00199 . 10 502 Mechanosensitive Ion Channel Family AT1G58200 67.6 6.4e-191 664.8
Cma16g00747 . 6 710 Mechanosensitive Ion Channel Family AT1G58200 50.4 7.6e-176 614.8
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 55.6 1.3e-263 906.7
Cma20g00732 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 53.1 1.6e-247 853.2
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.8 2.6e-282 968.8
Cma11g01360 . 65 932 Mechanosensitive Ion Channel Family AT1G78610 52.0 5.9e-234 808.1
Cma20g00732 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.7 8.4e-233 804.3
Cma11g01360 . 270 926 Mechanosensitive Ion Channel Family AT2G17000 56.6 5.9e-202 701.8
Cma10g00752 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.4 2.8e-200 696.0
Cma01g01705 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 50.2 2.3e-165 580.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00875 Cma_Chr12 FPKM 4.714756 4.048717 4.163947 4.735971 5.274147 3.588398 4.841864 3.95363 3.53277 3.911554