Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00875 ATGATAAACAAAAAACGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCGAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCATAAGAGCACCCTCTGTATGTCGTCTACACACACCAAGTTATGGTACACATCCCATTGCTACTTTTTCCCCGGCATCACCAGTGAAATATTGGAACACTATCCCTCCTACATCTCTTGCCTATCTGTCAAACCCTCGATTCTATTCATCGACTTCTAGCAGGAAAGCGGATATTACTGGAGATACTGGTGTTCCACTAGCTTCTTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGCTGGCAGAGTGCTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGATCTTAGATTCACATCCATATCTGAAGAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCTATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGAGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAGTTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTTCGAGGGATATACTTGGGAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAATAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATTTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAGGTCTCACCCTAAGGTATTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCAAATTGAAAAGCAAGATATTCTCCTCCAGTCAGTACAGATCATCAAAGAAAATGGTGCAACCTTGGGTAACTGA 1518 42.36 MINKKRASKSYLNPCSFQYCKSYTKISEYVNRVLRPSVVLNKQYYKDESHSLKNVSRTGFIRAPSVCRLHTPSYGTHPIATFSPASPVKYWNTIPPTSLAYLSNPRFYSSTSSRKADITGDTGVPLASSGVEADISNPPDVGRDWLERVKDGWQSAVDAASFTGQKAREVSDEFSPHVDKILDSHPYLKNEIAPVGMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSTSIEEIPYEKSFWGALEDPLRYLVTFYAFSQIGKMVAPTAIASEFVSQACRGAVILSLVWFIYRWKTNVFSRALASQNFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFASRDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVIEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPFQVADFSTVSKISDDIKSMLRSHPKVFLGKEAPYCFLSQIEKQDILLQSVQIIKENGATLGN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6573278 6577896 - CmaCh12G008750.1 Cma12g00875 305365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00875 505 Gene3D - 277 379 - -
Cma12g00875 505 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 89 504 - -
Cma12g00875 505 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 89 504 - -
Cma12g00875 505 Gene3D - 381 429 IPR023408 -
Cma12g00875 505 SUPERFAMILY Sm-like ribonucleoproteins 365 430 IPR010920 -
Cma12g00875 505 Pfam Mechanosensitive ion channel 323 479 IPR006685 GO:0016020|GO:0055085
Cma12g00875 505 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 282 363 IPR011014 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00875 Cma-Chr12:6573278 Cma16g00747 Cma-Chr16:3999600 4.88E-10 dispersed
Cma12g00875 Cma-Chr12:6573278 Cma05g00546 Cma-Chr5:2650712 7.93E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00875 K22047 - csv:101220483 776.933