Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00891 ATGATGGAGAAAATCCCCATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGAGAAGGTTTAACATCTCAAGAAGGGGAGAACCGTCTTCAAATCTTTGGGCCCAACAAGCTAGAAGAGAAAAAGGAAAGCAAGATTCTGAAGTTCCTTGGTTTTATGTGGAATCCCCTTTCATGGGTCATGGAGGCTGCAGCTATCATGGCCATTGCCTTGGCTAACGGAGGCGGCAAGGGACCGGATTGGCAGGACTTCGTCGGTATCGTGTGTCTGCTGGTTATCAACTCCACCATTAGTTTCATTGAAGAGAACAATGCTGGTAATGCAGCTGCTGCTCTTATGGCTGGTCTTGCTCCTAAGACTAAGGTTCTGAGGGATGGAAAATGGTGTGAACAAGATGCAGCAATTCTGGTACCAGGGGACGTGATTAGTGTCAAATTGGGAGACATCATCCCGGCTGATGCTCGTCTTCTAGAGGGCGATCCGTTAAAGGTGGATCAATCTGCATTGACGGGAGAATCGCTTCCGGTGACGAAGCATCCAGGGGATGAAGTGTTCTCTGGTTCAACTTGCAAACAAGGAGAAATAGAAGCTGTTGTTATTGCCACTGGTGTCCACACCTTCTTTGGAAAGGCAGCTCATCTGGTTGACAGCACCAACCAAGTTGGTCACTTCCAAAAGGTTCTCACTGCCATTGGGAACTTCTGTATCTGTTCCATTGCCATTGGTATGCTGATTGAGATCATCGTCATGTACCCGATCCAACACCGTGCCTACAGAGATGGAATCGACAATCTTTTGGTTCTCTTGATTGGAGGAATTCCCATTGCTATGCCTACTGTCTTGTCTGTCACTATGGCTATTGGCTCTCACAAGTTGTCCCAACAGGGAGCTATCACCAAGAGAATGACTGCCATCGAAGAAATGGCCGGTATGGACGTCCTCTGCAGCGACAAGACCGGAACGCTCACGCTTAACAAGTTGAGTGTTGACAAGAACTTGATTGAGGTATTTGTCAAGGGTGTCGACAAAGACCATGTCGTTCTTCTTGCTGCCCGGGCTTCTAGGACTGAAAACCAGGATGCCATTGATGCTGCCATGGTCGGTATGCTTGCTGACCCGAAAGAGGCAAGAGCTGGCATTAGAGAAGTTCACTTCCTCCCATTCAACCCTGTCGACAAGCGAACTGCCTTGACTTACATCGATTCCAACGGTAACTGGCACCGTGCTAGCAAAGGAGCTCCCGAGCAGATCTTGAGTCTTTGCAACTGCAAAGAGGACTTCAAGAGGAAGGTGTTTTCAGTAATCGACAAGTTTGCCGAACGTGGACTTCGATCGTTGGCTGTTGCTCGACAGGAAGTGCCTGAAAAAACCAAGGAGAGTCCCGGTTCTCCATGGCAATTCGTCGGTTTGTTGCCTCTTTTCGATCCTCCTCGACACGACAGTGCTGAAACCATCCGCCGAGCTCTCAACTTGGGAGTGAATGTCAAGATGATTACAGGTGATCAACTTGCTATTGGAAAGGAAACCGGCCGAAGACTCGGAATGGGAACGAATATGTACCCGTCTTCTTCCTTACTCGGTCAACACAAGGACGAAAGCATTGCTGGCCTCCCAGTTGAAGAGTTGATTGAGAAAGCTGATGGATTTGCCGGAGTGTTTCCAGAACACAAATATGAAATTGTCAAGAAGTTGCAAGAAAGGAAGCACATTTGTGGAATGACAGGAGATGGTGTCAATGATGCCCCTGCTTTGAAGAAGGCTGACATTGGTATTGCTGTTGCTGATGCTACTGATGCTGCACGAGGCGCGTCGGATATCGTTCTAACCGAGCCTGGATTGAGTGTTATCATCAGTGCCGTGTTGACTAGCCGAGCAATCTTCCAAAGGATGAAGAACTATACCATTTATGCAGTTTCCATCACCATTCGTATCGTGTTTGGTTTTATGTTGATCGCTCTCATTTGGAAGTTCGATTTCTCACCGTTCATGGTTCTAATTATCGCCATCTTGAACGACGGTACAATTATGACAATCTCAAAGGACAGAGTGAAGCCATCTCCATTGCCTGACAGTTGGAAACTCAAGGAGATTTTCGCCACCGGAGTAGTACTCGGCGGGTACTTGGCGTTGATGACGGTTATATTCTTCTGGCTAATGGACGGAACCGACTTCTTCACCGATAAATTCGGTGTGAGATCGATTCGTCATAACGAAGACGAAAAGATGGCTGCTTTGTACTTGCAAGTGAGTATTGTTAGCCAAGCTTTGATTTTCGTAACTCGATCACGTAGCTGGTCGTACGTCGAGCGTCCCGGACTTCTCTTAGTCAGTGCTTTCTTCATTGCACAATTGGTTGCAACTGTGATAGCTGTGTATGCTGATTGGTCATTTGCTAAGATCAAGGGCGTTGGATGGGGATGGGCTGGTGTCATCTGGCTTTATAGCATTGTTTTTTACGTTCCGCTCGATATCATGAAGTTTGCTATTCGATACATCTTGAGCGGAAAGGCGTGGGTGAGCATGTTAGAAAACAAGACTGCCTTCACTACCAAGAAAGACTATGGAAAAGAAGAAAGGGAAGCTCAATGGGCACTTGCTCAAAGGACACTACATGGACTTCAACCACCGGAATCGACGAACATCTTCTCCGAAAAGAGTAGCTACCGAGAACTCTCCGAGATCGCCGAGCAAGCTAAGAGACGTGCCGAGATTGCAAGGCTTCGTGAGCTCAACACGCTCAAAGGTCACGTCGAGTCAGTCGTTAAGTTGAAGGGGCTCGATATCGACACGATCCAGCAGCACTATACAGTGTGA 2814 47.48 MMEKIPIEEVFEQLKCTREGLTSQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEQDAAILVPGDVISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDHVVLLAARASRTENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGNWHRASKGAPEQILSLCNCKEDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESPGSPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTDFFTDKFGVRSIRHNEDEKMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVSAFFIAQLVATVIAVYADWSFAKIKGVGWGWAGVIWLYSIVFYVPLDIMKFAIRYILSGKAWVSMLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6799023 6803800 + CmaCh12G008910.1 Cma12g00891 305381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00891 937 Pfam Cation transporter/ATPase, N-terminus 4 67 IPR004014 -
Cma12g00891 937 Gene3D - 886 937 - -
Cma12g00891 937 SFLD p-type atpase 297 625 IPR044492 -
Cma12g00891 937 Gene3D - 80 801 - -
Cma12g00891 937 Pfam haloacid dehalogenase-like hydrolase 311 588 - -
Cma12g00891 937 Gene3D - 118 202 - -
Cma12g00891 937 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 549 662 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00891 937 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 87 335 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00891 937 Pfam E1-E2 ATPase 117 294 - -
Cma12g00891 937 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 20 792 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma12g00891 937 Gene3D - 312 611 IPR023214 -
Cma12g00891 937 PRINTS H+-transporting ATPase (proton pump) signature 746 767 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00891 937 PRINTS H+-transporting ATPase (proton pump) signature 431 449 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00891 937 PRINTS H+-transporting ATPase (proton pump) signature 605 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00891 937 PRINTS H+-transporting ATPase (proton pump) signature 546 562 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00891 937 PRINTS H+-transporting ATPase (proton pump) signature 574 590 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00891 937 PRINTS P-type cation-transporting ATPase superfamily signature 597 609 - -
Cma12g00891 937 PRINTS P-type cation-transporting ATPase superfamily signature 165 179 - -
Cma12g00891 937 PRINTS P-type cation-transporting ATPase superfamily signature 469 480 - -
Cma12g00891 937 PRINTS P-type cation-transporting ATPase superfamily signature 491 501 - -
Cma12g00891 937 PRINTS P-type cation-transporting ATPase superfamily signature 315 329 - -
Cma12g00891 937 PRINTS P-type cation-transporting ATPase superfamily signature 574 593 - -
Cma12g00891 937 PANTHER PLASMA MEMBRANE ATPASE 2 917 - -
Cma12g00891 937 SMART Cation_ATPase_N_a_2 1 73 IPR004014 -
Cma12g00891 937 SUPERFAMILY HAD-like 311 621 IPR036412 -
Cma12g00891 937 Coils Coil 888 908 - -
Cma12g00891 937 PANTHER CALCIUM-TRANSPORTING ATPASE 2 917 - -
Cma12g00891 937 CDD P-type_ATPase_H 20 827 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma12g00891 937 SUPERFAMILY Calcium ATPase, transmembrane domain M 4 833 IPR023298 -
Cma12g00891 937 Gene3D - 327 474 IPR023299 GO:0000166
Cma12g00891 937 SFLD Haloacid Dehalogenase 297 625 - -
Cma12g00891 937 SUPERFAMILY Calcium ATPase, transduction domain A 118 215 IPR008250 -
Cma12g00891 937 ProSitePatterns E1-E2 ATPases phosphorylation site. 317 323 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00891 Cma-Chr12:6799023 Cma14g01362 Cma-Chr14:10579983 0 dispersed
Cma01g01567 Cma-Chr1:10854825 Cma12g00891 Cma-Chr12:6799023 0 transposed
Cma11g00369 Cma-Chr11:1833404 Cma12g00891 Cma-Chr12:6799023 0 transposed
Cma12g00291 Cma-Chr12:1492694 Cma12g00891 Cma-Chr12:6799023 0 transposed
Cma12g00891 Cma-Chr12:6799023 Cma05g00694 Cma-Chr5:3657703 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00891 K01535 - csv:101221564 1752.64