Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00908 ATGGTGGGGAATTTCCAGCCCACGGTTCTTGTGTTTCTGGCAATTCTTGTTGTTGGGAAGGCGGAAATTTACATTGTCACAATTGATGGAGAACCTATTGTGAGTTACAAAGGTGATCTTGATGGATTTGAGGCCACTGCAGTGGAATCTGATGAAAAGATCGACTCTACCAGTGAAATTGTGACATCCTATTCTCGTCACCTTGAAAATAAACATGATATGCTTCTTGGGATGTTGTTTGAGAGAGGATCCTTCAAGAAGCTCTATAGTTATAAACATCTCATCAATGGATTTGCTGTTGACATCTCGCACGAGCAGGCAGAGACTCTAAGACACACGCCAATTGTAAAATCTGTGGAGAGGGACTGGAAGGTTAGGAAACTAACAACACATACACCGGAGTTTTTGGGTCTTCCAACAGGCGTATGGCCAACCGGCGGTGGCTTTGACAGGGCTGGAGAAGACATTGTGATTGGATTTGTGGACTCAGGGATATATCCACACCATCCAAGTTTTGCTACCTATAATACCGAACCTTTCGGGCCATGTTCGAAGTATAAAGGGAAATGTGAAGTTGACCCCAACACCAAGAAGAATTTTTGTAATGGAAAGATCGTTGGAGCTCAACATTTTGCAGAAGCTGCTAAAGCAGCTGGGGCATTTAATCCTTCTATTCATTTTGCATCTCCTTTGGATGGTGACGGACATGGAAGCCATACTGCAGCAATTGCAGCTGGAAACAATGGAATCCCTGTGAGACTGCATGGCTATGAATTTGGTAAAGCAAGTGGGATGGCTCCTCGTGCTAGAATTGCTGTATATAAAGCTCTCTACAGGATTTTTGGAGGATTTGTTGCTGATGTAGTGGCAGCTATCGATCAGGCTGTACATGATGGGGTCGATATTCTGAGTCTTTCGGTGGGGCCAAATAGTCCTCCTGCAACTACAAAGATCACATATTTAAACCCTTTTGATGCTACCCTTCTTTCAGCTGTGAAGGCTGGCGTCTTTGTTGCGCAAGCTGCTGGGAATGGAGGCCCATTTCCTAAAACATTGGTGTCCTATAGTCCATGGATAGCCACTGTGGCTGCTGCCATTGATGACAGAAGATACAAAAACCATCTGACACTTGGTAATGGAAAAATCCTGGCTGGACTTGGGCTATCACCTGCTACACATTTAAATCGAACGTACACATTGGTCGCAGCTAACGACGTTCTGTTAGATTCTTCAGTAAGGAAGTCCAGCCCCTCTGACTGCCAAAGGCCAGAAGTTCTAAACAAACGACTGGTTGAAGGGAAGGTTCTTCTTTGTGGCTATTCATTCAGTTTTGTTGTTGGTACCGCTTCAGTCAAGAAGGTCGCTCAAACTGCAAAAGCCCTTGGTGCTGCTGGCTTTGTTCTTGCTGTTGAAAACGTCTCTCCTGGAGCAAAATTTGACCCTGTTCCTGTTGGCATTCCTGGGATTCTTTTAACTGATGTCACCAAGTCGATGGATCTTATAGACTACTACAACACCTCTACACCCAGAGACTGGACAGGTCGGGTCAAGAGCTTTGACGCTGTGGGTAGCATTGGTGATGGTTTGATGCCTTTATTGTACAAATCAGCTCCTGAGGTTGCATTGTTTTCTGCTCGTGGGCCAAATATTAGAGACTTCAGCTTTCAGGATGCTGACCTTCTCAAACCAGATATTCTAGCTCCTGGTTCTCTGATATGGGCTGCTTGGTCTCCAAATGGTACAGACGAACCTAACTATGTTGGAGAGGCATTTGCTATGATTTCTGGAACGAGCATGGCAGCACCGCATATAGCCGGTATAGCAGCTCTTGTAAAACAGAAGCATCCTAACTGGAGTCCTGCAGCCATCAAATCGGCCTTGATGACGACATCAACGACAATGGACAGAGCAGGAAGACCTCTTAAAGCACAACAATTTTCCGAAACAGAAGTCATGAAACTAGTATCTGCAACGCCTTTCGATTACGGGAGTGGTCATGTAAACCCAAGAGCAGCACTGGATCCTGGACTCATCTTTGATGCAGGTTATGAAGATTACTTGGGATTTTTGTGCACGACAGCAGGCATCAACGTGCACGAGATACACAACTATACTAACTCACCCTGCAACTTCACCATGGGACATCCCTGGAATCTAAACAGCCCATCAATTACCATCGCCCATCTTGTGGGAACTAAGACTGTTACTCGCACAGTAACAAATGTTGCTGAGGAAGAAACCTATACAGTTACTGCAAGAATGGACCCTGCTATTGCCATAGAAACAAATCCTCCAGCAATGACTCTACGATCTGGGTCGTCGAGAAAATTTTCAGTAACTCTCACAGCTCGTTCACAGACTGGAACATATAGTTTTGGCGAGGTTGTATTGAAGGGCAGTAGGGGCCACAAGGTTAGAATACCTGTAGTAGCCATGGGATACCAACGATGA 2451 45.25 MVGNFQPTVLVFLAILVVGKAEIYIVTIDGEPIVSYKGDLDGFEATAVESDEKIDSTSEIVTSYSRHLENKHDMLLGMLFERGSFKKLYSYKHLINGFAVDISHEQAETLRHTPIVKSVERDWKVRKLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFATYNTEPFGPCSKYKGKCEVDPNTKKNFCNGKIVGAQHFAEAAKAAGAFNPSIHFASPLDGDGHGSHTAAIAAGNNGIPVRLHGYEFGKASGMAPRARIAVYKALYRIFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKITYLNPFDATLLSAVKAGVFVAQAAGNGGPFPKTLVSYSPWIATVAAAIDDRRYKNHLTLGNGKILAGLGLSPATHLNRTYTLVAANDVLLDSSVRKSSPSDCQRPEVLNKRLVEGKVLLCGYSFSFVVGTASVKKVAQTAKALGAAGFVLAVENVSPGAKFDPVPVGIPGILLTDVTKSMDLIDYYNTSTPRDWTGRVKSFDAVGSIGDGLMPLLYKSAPEVALFSARGPNIRDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEAFAMISGTSMAAPHIAGIAALVKQKHPNWSPAAIKSALMTTSTTMDRAGRPLKAQQFSETEVMKLVSATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTAGINVHEIHNYTNSPCNFTMGHPWNLNSPSITIAHLVGTKTVTRTVTNVAEEETYTVTARMDPAIAIETNPPAMTLRSGSSRKFSVTLTARSQTGTYSFGEVVLKGSRGHKVRIPVVAMGYQR 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6963550 6969548 - CmaCh12G009080.1 Cma12g00908 305398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00908 816 Gene3D - 690 813 - -
Cma12g00908 816 Pfam Fibronectin type-III domain 718 810 IPR041469 -
Cma12g00908 816 Pfam Peptidase inhibitor I9 24 126 IPR010259 -
Cma12g00908 816 Pfam Subtilase family 153 634 IPR000209 GO:0006508|GO:0008236
Cma12g00908 816 SUPERFAMILY Subtilisin-like 128 677 IPR036852 GO:0004252|GO:0006508
Cma12g00908 816 Gene3D - 368 533 - -
Cma12g00908 816 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 14 815 IPR045051 -
Cma12g00908 816 PANTHER CUCUMISIN-RELATED 14 815 - -
Cma12g00908 816 ProSiteProfiles Serine proteases, subtilase domain profile. 122 673 - -
Cma12g00908 816 ProSitePatterns Serine proteases, subtilase family, serine active site. 596 606 IPR023828 -
Cma12g00908 816 PRINTS Subtilisin serine protease family (S8) signature 153 172 IPR015500 -
Cma12g00908 816 PRINTS Subtilisin serine protease family (S8) signature 232 245 IPR015500 -
Cma12g00908 816 PRINTS Subtilisin serine protease family (S8) signature 595 611 IPR015500 -
Cma12g00908 816 CDD PA_subtilisin_like 375 513 - -
Cma12g00908 816 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 128 IPR037045 -
Cma12g00908 816 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 158 169 IPR023827 -
Cma12g00908 816 SUPERFAMILY Protease propeptides/inhibitors 85 126 - -
Cma12g00908 816 Gene3D Peptidase S8/S53 domain 155 686 IPR036852 GO:0004252|GO:0006508
Cma12g00908 816 CDD Peptidases_S8_3 129 632 IPR034197 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00712 Cma12g00908 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01472 Cma-Chr3:9160989 Cma12g00908 Cma-Chr12:6963550 0 dispersed
Cma07g00037 Cma-Chr7:249454 Cma12g00908 Cma-Chr12:6963550 0 dispersed
Cma12g00908 Cma-Chr12:6963550 Cma10g00769 Cma-Chr10:3535963 7.77E-112 dispersed
Cma16g00551 Cma-Chr16:2835858 Cma12g00908 Cma-Chr12:6963550 4.74E-08 transposed
Cma18g00570 Cma-Chr18:3838893 Cma12g00908 Cma-Chr12:6963550 0 transposed
Cma12g00908 Cma-Chr12:6963550 Cma05g00712 Cma-Chr5:3783766 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00908 - - csv:101219351 1560.04