Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00915 ACATCGCAATCAGAATCCGCCATCATCGCCACCGTCTCCTCCGGCCGTCCGCCCGATCCGCCGCCGATGGATAACATTCTCGACGAGTATCTGAAAAATTGGGAAACGGACATGTTTCTGCTGACGGAAGACTCCGGCAGCAGCGGGTGGGGACTGGAGGAAGCATTTTACGGTGCTTACAATTCGAGCTCGCCGGACGGCAAGGTGTCGCCGTCGTCGCCGTCGGAGGCGTCGAAGAATATCGTGTCGGAGAGAAATCGGAGAAAGAAGCTTAACGATAGGCTTATTGCTCTCCGAGCTGTAGTCCCCAATATCACCAGAATGGACAAGGCGTCAATAATAAAAGATGCAATCACATACATCCAAGAGTTGCAAGCGGAAGAGAAGAGAATCAAAACAGAGATTTTCGATCTGGAATCAAGCGTAAACAACAAGAGATCAAGAACCACAAATCAATGGAACAACGAAAATGGAGATCGAATTTGGACGAACATGAAATGGAATCAGCAAACAACCGACGCTTCATCGTCTTCTTCGATCGAAGTTCTCGATTTGAGTGTGAATTACGTGGGCGAGAAGGTGATGGTGGTGAGTTTGACGTGCTTACGCCGAGGCAACATGATATTGAAGGTTTGGGAAGTGATTGAATCGTTGAAGTTGAAGATCATTACTGCTAATATCAATGTCTTTGCAAACAAGCTCTTGAACACGCTCTTCATTGAGAATTTCAACAATTCTCGATTCTATTCTTCTACACAAGCCTTGCAATTCCAGTTTTGTCTGCAAAATCTTTCAAACAAAATACCCAAATTGCTCGATCAAGATCTCCGTCGCTTTTCCTCCATCGAAAGAGCTTTCGATCAGATTGAAAAGCGTTCTTCAATCGCTCCGTGTCGAAGGCAGGTAGTTGCTGTTGAAGAGAAGAACTCTGCAATCATAAGCTTCAATTCTGAGATGGATTGGGTTTAG 969 45.72 TSQSESAIIATVSSGRPPDPPPMDNILDEYLKNWETDMFLLTEDSGSSGWGLEEAFYGAYNSSSPDGKVSPSSPSEASKNIVSERNRRKKLNDRLIALRAVVPNITRMDKASIIKDAITYIQELQAEEKRIKTEIFDLESSVNNKRSRTTNQWNNENGDRIWTNMKWNQQTTDASSSSSIEVLDLSVNYVGEKVMVVSLTCLRRGNMILKVWEVIESLKLKIITANINVFANKLLNTLFIENFNNSRFYSSTQALQFQFCLQNLSNKIPKLLDQDLRRFSSIERAFDQIEKRSSIAPCRRQVVAVEEKNSAIISFNSEMDWV 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7027138 7031819 + CmaCh12G009150.1 Cma12g00915 305405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00915 322 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 24 241 - -
Cma12g00915 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 139 IPR036638 GO:0046983
Cma12g00915 322 SMART finulus 81 130 IPR011598 GO:0046983
Cma12g00915 322 Gene3D - 70 141 IPR036638 GO:0046983
Cma12g00915 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Cma12g00915 322 PANTHER TRANSCRIPTION FACTOR BHLH35 24 241 - -
Cma12g00915 322 MobiDBLite consensus disorder prediction 62 85 - -
Cma12g00915 322 MobiDBLite consensus disorder prediction 63 80 - -
Cma12g00915 322 MobiDBLite consensus disorder prediction 1 23 - -
Cma12g00915 322 Pfam Helix-loop-helix DNA-binding domain 82 125 IPR011598 GO:0046983
Cma12g00915 322 Coils Coil 121 141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00372 Cma12g00915 CCT
Cma11g00359 Cma12g00915 CCT
Cma05g00719 Cma12g00915 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00915 Cma-Chr12:7027138 Cma20g00525 Cma-Chr20:2531997 3.68E-22 dispersed
Cma10g00372 Cma-Chr10:1713555 Cma12g00915 Cma-Chr12:7027138 4.05E-62 wgd
Cma11g00359 Cma-Chr11:1786261 Cma12g00915 Cma-Chr12:7027138 9.77E-63 wgd
Cma12g00915 Cma-Chr12:7027138 Cma05g00719 Cma-Chr5:3861355 5.86E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36025 PF00010 HLH 4.10E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00915 - - csv:101203107 248.44