Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00923 ATGGAAAGTCTAAAGAGAACAATATCTACTAATGGTGAGCTTGAACTGACTGAACCGCCATTTGTTTTCCCGGCGAGATTTTTCATTCTGTCATTCTCCGATGACTTGCGTTGCCTGAAAACACAACTTGACGGTGCCACCTCTCCTGCGACAGATTTTTCGACTATGAGTTCATTCAAAGGACGGAGTGATGTGGAGTCCGGTAGTAGCAACTCCGGCGAGCCGGAGGAGGAGGAATCATCCAATCCTTTCGCTATTCTCAGAACTAAGCATGCTTCCGTTGACAGACTCCGCCGCTGGAGACAAGCTGCGCTCGTGTTAAATGCTTCTCGTCGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAAAAGAAAGAAGCTTTGAAAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCGCTTTAAAGAGGCTGGGGATCGTCTAAGAGGTTCTTTAGGTTCAGGACCTTCGAGAGCAGAAGCTCCAAATGGTGATTTTCCTGTTGGGCAAGAGCAACTGGCTGCGTTGGTAAAGGATCGTAATGTTGATAGTCTGGAGGAGCAATATGGAGGGGTTAAAGGGGTGGCAGATATGTTACAAACGAATTTAGAGAAGGGGATAATTGGTGATGACTCTGATTTACTGAAACGAAGAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCGGCTGTTGCTTCATTGGTGTTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTTGTAACAGCTATAAGTGACTACCGACAATCTCTTCAATTTCAGAATTTGAATAAGGAAAAGAGGAACATACAAGTGGAGGTTGTTCGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGACATTGTTGTTGGAGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGACGGCATCTTAATTTCTGGACACTCACTTGCAATTGATGAATCAAGCATGACTGGAGAGAGCAAGATCGTTCAAAAGCAGCATGCTAAGGACCCTTTCCTGATGTCTGGATGCAAAGTGGCTGATGGTCATGGCACTATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCTCAATAGCTTTCGCTGTCTTGATTGTGCTCCTCGCAAGATATTTCACTGGTCACACCAAAAATCCAGATGGAAGCCGTCAGTTTATTGCGGGGCAGACAAAAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTGACCATCGTTGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACATTAACCCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGTTGGTGGGAAGAAGACTGATCCACCAGAGAAGAAGTCAGAGTCATCTTCCATGTTATACTCCTTACTTGTTGAAGGCATTGCTCTGAACTCAAACGGCAGTGTATATGTGCCTGAGAGTGGTGGAGAGGAAGAGGTTACAGGTTCGCCTACAGAAAAGGCTATTCTTAACTGGGGTATCAAGCTGGGAATGAACTTTGAAGCAATAAGAAAGGAATGTGCAATTCTTCACGTTTTCCCCTTCAGCTCAGACAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAGTCAAGTTTATATACATTGGAAAGGTGCTGCTGAGATTGTCTTAGCATCGTGCACACAGTACATGGATGAACATGATCAAACTGTCCTACTAGATGAAGATAAGATGACATATTTCAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGGTGTGTTGCAATTGCATATAGATCTTGTGAACCTGAGAATGTTCCTGACGGTGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGTTGGTTTGAAGGACCCCTGTCGGCCAGGAGTAAGAGATGCTGTACGACTTTGTCAAAAAGCTGGTGTTAAGGTACGAATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCACTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGCATTCCGTGCCCTGACTGATGCCCAAAGAGAAGAAATTGCTGAGAAAATATCAGTGATGGGTCGGTCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCCTTGAGAAAGAGAGGACATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGCCTTGCAATGGGTATCCAGGGGACAGAAGTTGCTAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTGAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACTGTCAATGTTGCGGCACTCATTATCAATGTCGTGGCGGCAATATCCTCTGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGAGCATTAGCATTGGCTACTGAACCACCAACCGATCACCTCATGGACAGGACGCCTGTTGGTAGAAGTGAACCTCTTATAACAAATATCATGTGGAGAAACCTGCTGATACAGGCATTTTATCAAGTTACTGTGTTGCTTGTCCTCAACTTTCGCGGTCGAAGTTTGCTTCATTTGAACCACTCTCATGTAGAAGCTATCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGTCAAGTTTTTAATGAATTTAATGCTCGAAAGCCAGATGAGAAGAATATATTCAAAGGAGTCAATAAAAATTACCTCTTTATTGGGATCATTGGAATTACTCTTGTGCTCCAGGTTATAATAATCGAGTTTCTGGGGAAATTCACATCCACAGTCAGACTTAATTGGAAGTATTGGATTATTTCCATAATCATTGGTGTGATCAGTTGGCCCCTAGCTCTCCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTTATTATCAGAATGTTCCGTAAACGACGAGCTGGGAGATCGTAA 3387 43.22 MESLKRTISTNGELELTEPPFVFPARFFILSFSDDLRCLKTQLDGATSPATDFSTMSSFKGRSDVESGSSNSGEPEEEESSNPFAILRTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALKKIRAHAQAIRAAYRFKEAGDRLRGSLGSGPSRAEAPNGDFPVGQEQLAALVKDRNVDSLEEQYGGVKGVADMLQTNLEKGIIGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVLLVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKQHAKDPFLMSGCKVADGHGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLSIAFAVLIVLLARYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYVGGKKTDPPEKKSESSSMLYSLLVEGIALNSNGSVYVPESGGEEEVTGSPTEKAILNWGIKLGMNFEAIRKECAILHVFPFSSDKKRGGVAGQRDSQVYIHWKGAAEIVLASCTQYMDEHDQTVLLDEDKMTYFKRAIEDMASRSLRCVAIAYRSCEPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVRDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKAFRALTDAQREEIAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRSEPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSHVEAIKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFKGVNKNYLFIGIIGITLVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRRAGRS 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7124315 7148122 + CmaCh12G009230.1 Cma12g00923 305413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00923 1128 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 180 1107 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cma12g00923 1128 Gene3D - 218 413 - -
Cma12g00923 1128 SUPERFAMILY Calcium ATPase, transmembrane domain M 191 1107 IPR023298 -
Cma12g00923 1128 Pfam Cation transporter/ATPase, N-terminus 193 261 IPR004014 -
Cma12g00923 1128 Gene3D - 244 1096 - -
Cma12g00923 1128 MobiDBLite consensus disorder prediction 47 78 - -
Cma12g00923 1128 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 810 924 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00923 1128 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 477 565 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00923 1128 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 281 453 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00923 1128 Gene3D - 534 889 IPR023214 -
Cma12g00923 1128 PRINTS P-type cation-transporting ATPase superfamily signature 537 551 - -
Cma12g00923 1128 PRINTS P-type cation-transporting ATPase superfamily signature 759 769 - -
Cma12g00923 1128 PRINTS P-type cation-transporting ATPase superfamily signature 868 880 - -
Cma12g00923 1128 PRINTS P-type cation-transporting ATPase superfamily signature 844 863 - -
Cma12g00923 1128 PRINTS P-type cation-transporting ATPase superfamily signature 360 374 - -
Cma12g00923 1128 PRINTS P-type cation-transporting ATPase superfamily signature 737 748 - -
Cma12g00923 1128 SUPERFAMILY Calcium ATPase, transduction domain A 313 410 IPR008250 -
Cma12g00923 1128 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 544 741 IPR023299 GO:0000166
Cma12g00923 1128 Coils Coil 119 139 - -
Cma12g00923 1128 Pfam Cation transporting ATPase, C-terminus 929 1105 IPR006068 -
Cma12g00923 1128 Gene3D - 547 744 IPR023299 GO:0000166
Cma12g00923 1128 SFLD p-type atpase 519 896 IPR044492 -
Cma12g00923 1128 Gene3D - 92 148 - -
Cma12g00923 1128 Pfam haloacid dehalogenase-like hydrolase 534 858 - -
Cma12g00923 1128 Pfam E1-E2 ATPase 313 515 - -
Cma12g00923 1128 SUPERFAMILY HAD-like 535 949 IPR036412 -
Cma12g00923 1128 SFLD C1.7: P-type atpase like 519 896 - -
Cma12g00923 1128 PANTHER CALCIUM-TRANSPORTING ATPASE 69 1117 - -
Cma12g00923 1128 CDD P-type_ATPase_Ca_PMCA-like 218 977 - -
Cma12g00923 1128 PRINTS Sodium/potassium-transporting ATPase signature 530 551 - -
Cma12g00923 1128 PRINTS Sodium/potassium-transporting ATPase signature 279 299 - -
Cma12g00923 1128 PRINTS Sodium/potassium-transporting ATPase signature 655 673 - -
Cma12g00923 1128 SMART Cation_ATPase_N_a_2 192 266 IPR004014 -
Cma12g00923 1128 PANTHER CATION TRANSPORTING ATPASE 69 1117 - -
Cma12g00923 1128 MobiDBLite consensus disorder prediction 47 84 - -
Cma12g00923 1128 Pfam Ca2+-ATPase N terminal autoinhibitory domain 82 124 IPR024750 GO:0005516
Cma12g00923 1128 ProSitePatterns E1-E2 ATPases phosphorylation site. 539 545 IPR018303 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00724 Cma12g00923 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00846 Cma-Chr8:5121305 Cma12g00923 Cma-Chr12:7124315 0 dispersed
Cma12g00923 Cma-Chr12:7124315 Cma14g00550 Cma-Chr14:2735274 0 dispersed
Cma08g00318 Cma-Chr8:1808084 Cma12g00923 Cma-Chr12:7124315 0 transposed
Cma12g01119 Cma-Chr12:8851127 Cma12g00923 Cma-Chr12:7124315 0 transposed
Cma12g00923 Cma-Chr12:7124315 Cma05g00724 Cma-Chr5:4038867 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00923 K01537 - csv:101211703 1858.57