Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00930 ATGAAGACGCCGGCGAACGGTGTCGCCTCCTCCGCCGCCGCGCCTAATTCCTGCGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTACCGCCGGCCGGTTACCACGTAGTGTATTTCCCTCAGGGCCACAGCGAACAGGTTGCAGCATCTTTAAAGAAAGATGTGGATGCTCAAATCCCAAACTATCCTAATCTTCCTTCCAAGTTACTATGTCTGCTTCATAATGTAACATTACATGCTGACCCAGAAACTGATGAAGTATATGCTCAAATGACACTACAACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCTGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACAAGCACTCATGGGGGGTTCTCCGTGCCACGCCGTGCTGCTGACAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATCTACATGATACTGTATGGACTTTCCGTCACATATATCGAGGTCAACCGAAACGACATTTGCTGACAACAGGATGGAGCTTATTTGTTAGTGGCAAGAGACTTCTAGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAATAGGCAACCGACAAACTTGTCATCATCAGTGTTGTCGAGTGATAGTATGCACATTGGTATTCTTGCAGCTGCCGCCCATGCTGCTGCAAACAACAGCCCTTTTACTGTCTTTTACAACCCAAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTAGCCAAATACTATAAGGCGGTGTCTGCGAACCAAATATCGCTTGGTATGCGCTTCCGAATGATGTTCGAGACTGAAGAGTCTGGAACGAGAAGGTATATGGGCACTATCACAGGTATAAGTGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTCGGGTGGGACGAGTCGACAGGAGGAGAACGACGAAACCGAGTCTCGATATGGGAGATTGAACCGGTTATTGCTCCCTTTTTCATTTGCCCCCCTCCTTTCTTTAGATCAAAACGTCCAAGACAACCAGGAATGCCAGATGATGACTCCTCTGATTTGGATAGTATATTTAAAAGAACAATGTTTGGTGATGATTTCTGCATGAAAGATCCGCAGGGATATCCCGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTCTCCAATATGCAGCCAAATTATATGCATTCATTTTCTGGATCTATGCTTCCAAACCTTGGCGGAGTCGATATTTCTCGACAACTTGGCATGTCGAATGCACAAAATCCTCAATCAAATAACATACAGTTCAATGCACAAAGGCTACTTCCTCAAGCTCAACAGTTAGATCAGCTACCTAAGATACCATCGACTATGAACTCAATGGCATCCGTCGTGCAGCCACCGCAACAGTTCGATGATATCTCTCAGCAGACACGGCAGAATGTCGTCTCGAGCCAGATTCAGTCTCAAATAATGCAGCAGCCTCATGCTAATGGGATCTTACAGCAGCAAACCTCTTTGCAAAACCAGCAGCTTCAAAGAAGCCTCCCTCAGAACATGCTAATGCAGCAGCATCAGCAAATTTTGGGGCAGAATCAACAGCAGAATATGAACCAGCCACCGATCCCGGATCAGTCGAATCATCCGTTGCAAATGTCTGATAATCAGATTCAAATGCAGATGATGCAAAAGTTTCAGCAACAGCAGCAATCACTTTTGGCTCAGCAGTCTGTTCTTCAGCCTGCTCAACTTGCCCAACTCCCGGAACAGCAGAGCTTTTCGATATCCATGTCAACTAACCAAACGATCGATGTACCTCAATCTGCCCCAGCTGCAGGCCCTCCTCCATCAGCACAGCAGGCACCAAAGAGCCATAGCTCAAATCAGCATTTGCAGCCAAAATTCCCACAGTTACAGCAACAGCCTCATGATATGTCTAGGCCAATGGGACATAACAATCAGTTCTCTGCAGCTACTAGTAGTGTAATAACAGGAGCAGCAGGGGCAGGTCAATCAGGAATCACTGATGACATACCATCATGCTCCACATCTCCTTCCACAAACAACTGTCCAAGTTTGGTTCAACCTGTAACGAACGGACGCCTACATCGAACCACCGGATTAGTCGACGATGTTGCTCAATCTGCTGCTACAATATTCAGTACCAACACCTTGGATAGCATATCACCAAATGCCAACTTGGTTAAAAACATACCACACAAGGCTGCTGTTAAACCTTCACTGAATATCTCCAAGAATCAAAGCCATGGAGTTTTGACACAACAGACCTTCTTGACCGGTGCTGTTCCACAGACAGAGTTCTTGGACACATCGTCGTCAACAACGTCGGCTTGTCTTTCCCAGAATGATGCTCAGCTGCAGCAGAATAATATAATGTCTTTCAACTCACAGCCCATGTTGTTTAGAGATGGTTCACAGGATTTGGAGCCACCAACGGATCTTCATAACATTCCTTATGGGACTAATGTTGATGGACAATTGGTAGCACATTTAAATTCAGATCCTTTGTTGAACAAAGGCATTGGAGGGTTGGGGAAAGATTTCTCCAATAATTTCTCTTCTGGAGACATGCTTGCCACATATGACGCACAGAAAGATCCTCAACAGGAAATCTCTTCTTCTATAGTTTCACAATCATTTGGTATTCCGGATATGACATTCAATTCCATGGATTCAACGATAAACGACAGTTCCTTCTTAAATAGAAACCAATGGGCCCCTCCACCTCCTTTTCAACGTATGCGAACCTATACCAAGGTGTACAAACGTGGAGCTGTTGGGAGATCTATTGATATTACTCGCTACTCGGGCTACGATGAGCTTAAACAAGATCTCGCCCGTCGGTTCGGTATCGAGGGGCAATTGGAAGACAGGCAAAAGATAGGCTGGAAACTTGTTTATGTGGATCATGAAAACGATGTTTTACTTGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGAAGCATCAAGATCCTCTCCCCACAAGAAGTCCAACAAATGAGCTTGGATGGAGATTTTGGCAACGGTGTCCTACCTAACCAAGCCTGCAGTAGCTCAGATGGTGGAAACGCTTAA 3225 45.55 MKTPANGVASSAAAPNSCEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAADKIFPPLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFFRSKRPRQPGMPDDDSSDLDSIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNMQPNYMHSFSGSMLPNLGGVDISRQLGMSNAQNPQSNNIQFNAQRLLPQAQQLDQLPKIPSTMNSMASVVQPPQQFDDISQQTRQNVVSSQIQSQIMQQPHANGILQQQTSLQNQQLQRSLPQNMLMQQHQQILGQNQQQNMNQPPIPDQSNHPLQMSDNQIQMQMMQKFQQQQQSLLAQQSVLQPAQLAQLPEQQSFSISMSTNQTIDVPQSAPAAGPPPSAQQAPKSHSSNQHLQPKFPQLQQQPHDMSRPMGHNNQFSAATSSVITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVTNGRLHRTTGLVDDVAQSAATIFSTNTLDSISPNANLVKNIPHKAAVKPSLNISKNQSHGVLTQQTFLTGAVPQTEFLDTSSSTTSACLSQNDAQLQQNNIMSFNSQPMLFRDGSQDLEPPTDLHNIPYGTNVDGQLVAHLNSDPLLNKGIGGLGKDFSNNFSSGDMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDSSFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLPNQACSSSDGGNA 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7210503 7219648 + CmaCh12G009300.1 Cma12g00930 305420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00930 1074 PANTHER AUXIN RESPONSE FACTOR 1 1068 - -
Cma12g00930 1074 SUPERFAMILY CAD & PB1 domains 975 1041 - -
Cma12g00930 1074 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1068 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma12g00930 1074 MobiDBLite consensus disorder prediction 567 590 - -
Cma12g00930 1074 Pfam AUX/IAA family 960 1047 IPR033389 -
Cma12g00930 1074 CDD B3_DNA 133 225 IPR003340 GO:0003677
Cma12g00930 1074 MobiDBLite consensus disorder prediction 644 672 - -
Cma12g00930 1074 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Cma12g00930 1074 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Cma12g00930 1074 Gene3D - 132 235 IPR015300 -
Cma12g00930 1074 SMART B3_2 134 236 IPR003340 GO:0003677
Cma12g00930 1074 Gene3D - 298 368 - -
Cma12g00930 1074 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma12g00930 1074 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Cma12g00930 1074 Gene3D - 958 1051 - -
Cma12g00930 1074 ProSiteProfiles PB1 domain profile. 962 1047 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00930 Cma-Chr12:7210503 Cma12g01336 Cma-Chr12:10158039 0 dispersed
Cma12g00930 Cma-Chr12:7210503 Cma05g00728 Cma-Chr5:4096173 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36026 PF02309 AUX_IAA 2.50E-07 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00930 - - csv:101205542 1763.81