Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00935 ATGGCCAGAGGCGGAGCTCACAAGAAAGATGAATCCGTAGCGGTAGCGATCGATAAAGACAAATTCAGTCAACAGGCTTTGAAATGGACGATTGAACGGCTTCTTAGCAGAGGCCAAGTTCTTACTCTGCTTCACGTCAAACACAAACCGTCGCATTCGACGACGAACGTCGGTGCCTGTTCCGATTTGGATGACGCCGTTGCTCATAAACAGCAGGTTGATAATCAAGCCCATCAGTTCTTCCTCCCCTTTCGTTGCTTCTGCACGCGAAGCAATATACCATGCAATGAAGTGACGTTGGAGGAGGGAGATATTTCAAAAGCATTAATCAATTATGCCAACAAAAATGCTATTGACGTTTTAGTTCTTGGTGCTCCTTCAAGAACTGGCATTGTCAAACGATTCAAGTCGGACATCCCTAGTATCGTGTCGAAAGGAGCACCAGACTTCTGCACAGTTTACACTATTGGGAACAAAGGCAAGGTCTCTTCAATGCGACAAGCTACATCTCCAGCACCTGCAAAACCCATTTCTACGTCGCACAGCCAGCCACAACCCGCTTCACGCCCTCAATTGTTGCATCAGCTCACCAACGCCTCCAAGGCATCGGTCGAGCACCCGACCATCCTGCGCTCCCAACACTCCAAACATTTAGAGACTCAAGACAGCTTAGCATCAAATCCACCTTCCCGTGCCATTCACGAAGATTTTGAAATCAAGTCGCCGTTTAATCGGCCCGGGTCGAGGGCTTTGATGGGCAAAGGACAGGACACATCCACGGCGGATTCCGACATATCGTTCATGAGCAGCGGTAGGCAGAGCTTAGATCGTGGGAACTCGCCGGCGTGGAACTCCAGCACCAGGGACTCGTATCGGCTTTCAAACGGGTCGGGCTCGGAGCTCGAAACTTCGAGCCCGGGTTCAGCCTCGCCTTCGCCTATGTTGGGAATGGGAGGAATGAGGTCCATTGATAGTAATAATAACTCTTCTTATTCTAACCCTTACTCTCACGAAATGTCTTCTGCCTCCGAAAGTGAGACCTCTTGGGCTTCCCAATCTCATGCCCAGGAGGATGTTGAGGCTGAGATGAGGAGGCTGAAATTGGAGCTCAAACAAACCATGGACATGTACAGTACGGCCTGCAAAGAAGCCCTAAACGCCAAGCAAAAGGCGAGTGAGCTCCATCGCTGGAAAATGGAAGAAGAACACAGACTCGAAGAGGCAAGAATGGCGGAAGGAGCAGCATTGGCAATAGCAGAGAAGGAGAAGTTGAAATGCAAAGCGGCATTGCAGGCAGCCGAAGTTGCACAAAGAAGCGCAGTTCATGAAGCGAGGAAAAGAGCAAACGTCGAGAAACTTGCTGTTATGGAAGCAGAGGAAACCAAAAAAGCACTTGAAGGATTCGGACATGGCGATATCGGTTACAGAAGGTACTCAATCCAGGAAATCGAAACCGCCACGAATGGCTTCTCTGCTTCTTTGAAGATCGGTGAAGGCGGTTATGGTCCAGTCTACCGTGGAGAACTCGACCACACGCAGGTAGCGATTAAGGTCCTCCGCCCCGACGCCGCTCAAGGCCGATCGCAATTTCAGCGAGAGGTTGAGGTTTTAAGTTGTATTCGACATCCAAATATGGTTCTCCTCCTTGGAGCGTGTCCTGAGAACGGTTGTTTAGTTTACGAATTCATGGCGAACGGAAGCTTAGAAGACTGTCTCTTCCGAAAACCAGAGGATCCAGTTCTTCCATGGCAGTTACGATTCCGAATCGCGGAGGAAATCGCGACTGGACTTCTTTTCTTGCATCAAACCAGACCAGAGCCGATCGTGCATCGAGATCTGAAACCAGGAAACATTTTGCTAGATCGGAACTACGTGAGTAAAATCAGCGACGTAGGATTGGCGAGGCTTGTGCCGCCATCGGTAGCGAATTCGGTGACTCAGTATCGAATGACAGCGACGGCAGGGACTTTCTTCTACATCGATCCAGAGTATCAGCAAACAGGATTGCTAGGGATTAAATCAGATGTTTACTCGCTTGGTGTGATGCTTTTGCAAATAATCACGGCGAAACCACCAATCGGACTAGCGCATAACGTGGAGAGAGCGATTGAGAAGGGGAAGTTTGCGGAGATGCTTGATCCGGATGTGAAGGATTGGCCGGTTGAAGAAGCGTTGAAGTTTGCGAAGCTTTCGATTCAATGTGCAGAGATGAGGAAGAGAGATCGGCCGGACCTTGGGAAGGTGGTGCTCCCGGAGCTTAGTCGATTGAGAGCCATGGCGGAAGAGAGTATGGGAATTCAACCCTACAGTATCTGTGATTCGCCATGTATGAGCCAGGCTTCTTTTTCTCAGGAGCAGTTTAGTCTTCATCAAGGGCTTGATGAATCTGAGAGCTCATACTGCCATTCTGGAAGCAGCACGTCATCATATTCAGACAGAAGATCTTGGCTGAATTAA 2457 49.45 MARGGAHKKDESVAVAIDKDKFSQQALKWTIERLLSRGQVLTLLHVKHKPSHSTTNVGACSDLDDAVAHKQQVDNQAHQFFLPFRCFCTRSNIPCNEVTLEEGDISKALINYANKNAIDVLVLGAPSRTGIVKRFKSDIPSIVSKGAPDFCTVYTIGNKGKVSSMRQATSPAPAKPISTSHSQPQPASRPQLLHQLTNASKASVEHPTILRSQHSKHLETQDSLASNPPSRAIHEDFEIKSPFNRPGSRALMGKGQDTSTADSDISFMSSGRQSLDRGNSPAWNSSTRDSYRLSNGSGSELETSSPGSASPSPMLGMGGMRSIDSNNNSSYSNPYSHEMSSASESETSWASQSHAQEDVEAEMRRLKLELKQTMDMYSTACKEALNAKQKASELHRWKMEEEHRLEEARMAEGAALAIAEKEKLKCKAALQAAEVAQRSAVHEARKRANVEKLAVMEAEETKKALEGFGHGDIGYRRYSIQEIETATNGFSASLKIGEGGYGPVYRGELDHTQVAIKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPENGCLVYEFMANGSLEDCLFRKPEDPVLPWQLRFRIAEEIATGLLFLHQTRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVANSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDVYSLGVMLLQIITAKPPIGLAHNVERAIEKGKFAEMLDPDVKDWPVEEALKFAKLSIQCAEMRKRDRPDLGKVVLPELSRLRAMAEESMGIQPYSICDSPCMSQASFSQEQFSLHQGLDESESSYCHSGSSTSSYSDRRSWLN 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7273296 7278986 - CmaCh12G009350.1 Cma12g00935 305425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00935 818 Gene3D HUPs 11 149 IPR014729 -
Cma12g00935 818 MobiDBLite consensus disorder prediction 239 357 - -
Cma12g00935 818 CDD STK_N 12 160 - -
Cma12g00935 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Cma12g00935 818 SMART serkin_6 490 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00935 818 MobiDBLite consensus disorder prediction 321 355 - -
Cma12g00935 818 MobiDBLite consensus disorder prediction 253 311 - -
Cma12g00935 818 ProSiteProfiles Protein kinase domain profile. 490 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00935 818 Gene3D Transferase(Phosphotransferase) domain 1 563 767 - -
Cma12g00935 818 SUPERFAMILY Protein kinase-like (PK-like) 473 749 IPR011009 -
Cma12g00935 818 MobiDBLite consensus disorder prediction 796 818 - -
Cma12g00935 818 CDD STKc_IRAK 496 749 - -
Cma12g00935 818 MobiDBLite consensus disorder prediction 164 189 - -
Cma12g00935 818 PANTHER OS02G0152300 PROTEIN 8 791 - -
Cma12g00935 818 Pfam Protein tyrosine and serine/threonine kinase 494 748 IPR001245 GO:0004672|GO:0006468
Cma12g00935 818 Coils Coil 356 376 - -
Cma12g00935 818 Pfam Universal stress protein family 13 135 IPR006016 -
Cma12g00935 818 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 138 - -
Cma12g00935 818 Gene3D Phosphorylase Kinase; domain 1 472 562 - -
Cma12g00935 818 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 8 791 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00277 Cma-Chr12:1436928 Cma12g00935 Cma-Chr12:7273296 0 dispersed
Cma12g00935 Cma-Chr12:7273296 Cma19g00714 Cma-Chr19:7264273 0 dispersed
Cma12g00935 Cma-Chr12:7273296 Cma05g00733 Cma-Chr5:4142791 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68966 PF07714 PK_Tyr_Ser-Thr 2.10E-38 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00935 - - csv:101203771 1031.17