Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00938 ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTGAACGAGCATGCATATGATCTATCTCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACTCGTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCTGTTGCTATGTCTTTAGATAACAGCAGTGTGGGATCAAATGAATCTCACACTCGGATCTTAAATCACCAAGGTTTGCGACGGCGTGCAAATGACAACCAGACTTTTCAACATAGCGTTAACCGTCGTGGAAGAGTTACACACCACCTGAGTGATGATGCACTGGCTCGAGCTTTATTTGATACTAATACACCGACCCAGGGTCTTGAAAATTTTGAGAAGTGGATTCTTGATTTAAGGAAGCTCAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTGTACAGAGGTACTTATGATGGGGAAGATGTTGCTATCAAGATCTTGGAGAGGCCTGAGAATGACCTGGAGAAGGCCCAGTTAATGGAGCAACAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAAGCACCCAAACATTGTCAGGTTTATTGGAGCATGTCATAAGCCAATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGTGGTTCAGTTCGACAGTTCCTGATGAAGCGACAAAGTCGCTCTGTCCCCCTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGAGGGATGGAATATGTTCATGGCCTTGGATTGATTCACAGGGACTTGAAATCAGACAATCTTTTGATTTTTGCAGATAAGTCCATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAAGTGCAGACTGAGGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACTCAAAAGGTGGACCTGTATAGCTTTGGCATTGTTCTCTGGGAGCTGATAACTGGAATGCTCCCATTCCAGAACATGACTGCCGTTCAGGCCGCCTTTGCAGTTGTCAACAAGGGTGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTTTTGAGTGACATCATGACCCGATGCTGGGATGCCAACCCCGATGTTAGGCCATCATTTACTGAGGTTGTCAGAATGCTTGAGAATGCACAGAATGAGATCATGACGACCGTGCGCAAGGCTCGTTTCAGGTGTTGCATGAGGCAGCCAATGACAACAGACTGA 1242 46.05 MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNQTFQHSVNRRGRVTHHLSDDALARALFDTNTPTQGLENFEKWILDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQNEIMTTVRKARFRCCMRQPMTTD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7297489 7302125 - CmaCh12G009380.1 Cma12g00938 305428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00938 413 PANTHER SERINE-THREONINE PROTEIN KINASE 2 404 - -
Cma12g00938 413 SUPERFAMILY Protein kinase-like (PK-like) 117 386 IPR011009 -
Cma12g00938 413 ProSiteProfiles Protein kinase domain profile. 132 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00938 413 SMART serkin_6 132 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00938 413 CDD STKc_MAP3K-like 139 386 - -
Cma12g00938 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Cma12g00938 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672|GO:0006468
Cma12g00938 413 Gene3D Transferase(Phosphotransferase) domain 1 215 410 - -
Cma12g00938 413 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 404 - -
Cma12g00938 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cma12g00938 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672|GO:0006468
Cma12g00938 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672|GO:0006468
Cma12g00938 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672|GO:0006468
Cma12g00938 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672|GO:0006468
Cma12g00938 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00938 Cma-Chr12:7297489 Cma18g00163 Cma-Chr18:825651 3.28E-99 dispersed
Cma14g00675 Cma-Chr14:3434476 Cma12g00938 Cma-Chr12:7297489 3.41E-72 dispersed
Cma19g00758 Cma-Chr19:7517998 Cma12g00938 Cma-Chr12:7297489 3.13E-86 dispersed
Cma12g00938 Cma-Chr12:7297489 Cma05g00737 Cma-Chr5:4197602 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68967 PF07714 PK_Tyr_Ser-Thr 9.30E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00938 - - csv:101213713 818.92