Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00959 ATGGGGACAGAGCTTATACGAGTTTCTGTTGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTCGAGTCATATATATCATTTCCTCTAGGGAAAGTGCACAATCATGAAAAAGCTCACGTCCCTGTTAGTTTGCCGACGACCATCTCCGAGTCACAACCAGTTAAAGTGGAAACTGAGGTAGAAATTGCTGATGTTCCAAAAGTAACAAGGGCCCTCCGACGTAAACCATGTATAAACTATAGACAATTTGAGTACTGTTCCGACGACAAGCTTGATACTAAGCGCGTTGATCAGAATTTTTCTTCAAGGCCGCCTCTTTCGAAGGGAGTCATCCGTGGATGTCCTCAATGTAATAATTGCCAAAAGGTTGTTGCGAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACCTTGAGGCCGCTCCTGTGTTTTACCCAAATGAAGAGGAATTTGAAGATACTTTGACATATATAGCAAGCATACGAATAAAAGCAGAACCATACGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCGCTGAAGCAGAAACATATTTGGGAGAATTCTAAATTTGCAACTCGTGTCCAAAGGATCGATAAGCTTCAGAATCGTGATTCAATAAGAAAGAACTTTAGGGTTTGCAATCAAATGAGACGGAAAAGGAGGAGGGTTAATCGTAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAATGACGATGCTGGGTCTCGTGCGGCAGAAAGATTTGGATTTGATCCTGGTACAGATTTTACTTTAGAATCGTTTAAAAAATATGCTGACGACTTTAAGTCTCAGTATTTTAGTAAACCACTCCATGATACCGCTAAGGGATGTAATCCCTCCATGCTGCAAGAGAACGAGCATTGGAAACCGTCTGTGGAAAATATTGAGGGCGAATATTGGCGGATGGTAGAGAAGCCAACGGAAGAGATTGAGGTGCTCTATGGGGCTGATTTAGAAACTGGAGAGTTCGGCAGCGGTTTTCCGAAGAGTTGCTGTCAAGAGGGCTATACATCAGATGACGATAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTCCCTGGTTCGGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAATTACTTGCACTGGGGAGATCCCAAAGTATGGTACGGTGTTCCAGGAAACGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGATCTCTTCGACGAACAACCCGATTTACTTCATAAATTGGCAATAGTAACGGTCAAAAAATGTCGGCCTAAACTTCGAAGTTTTATTATTGAGCAGGTTACGCAACTTTCTCCGTCCATATTGAAATCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCGGGATTCAACAGTGGTTTCAATTGTGCTGAGGCAGTTAATGTCGCTCCAGTTGACTGGTTGCCCCACGGTCAAATTGCCGTAGAATTATATCGTGAGCAGGGACGAAGAACTACTATTTCCCACGATAAACTATTGCTCGGTGCAGCGAGGGAAGCTGTGAGAGCACACTGGGAACTTAATTTACAGAAAAGGAACACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGCTGGAGTGTGCACGGAGGAACATTCCGTGCAGTTCTTCTCGGGCAATGAAGATGGAAAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTATCTGCAGTTGGGTGCCGTTGTTCACCAGATAAGTATGTGTGCTTGAATCATGCAAACCAGTTGTGTTCTTGTGCATGGGAAGAGAAATTTTTTCTCTTTCGTTATGATATCAGTGAACTGAACATACTTCTTGAAGCATTGGAAGGAAAACTAAGTGCAATATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCGCTTAGTTCATCGAGGGAGTTGAATTCTCAATCATCAACCAAGTCGTTCGTGAATTCTCGGTTGGAAGATTTCTTGATTCGATCTTCATTATTGCCAACTCTAACTGCTATTGACAGCCCGTCTCACCGTGCCGAAAAGGTATCCGAAGTTACTGCTTCACATCTAGAAGATAAGAAGGTAATTTCTACACTTAATGGATCTGGGAAGGAAGTCGAGCAGAAAAACCTTAAATCTGAAGTGAAAAGCGAAAACCATGAACTCGTTTCAACCAATACAAATGCTCTGAATTTGGTAGAAGCGAAAAATCGAATGCATAAAATGTGTCCTGAAAATGTCATTCTACTAAGTGATGATGAAGGCGATGAGTATAAGAAGAAGATTTCAAATGGTTTAGCTGAAAGTTCAGATCGGTTCGCTGAGGTTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCAATCTTGCGTACCCCGGTGACCGATGCAACAACCATGGTCGAAAAGGAAGACAGAACATCGAATAGTTGTCAATCGAGCGTTGAACCTTTAAATAATAAACAGTCTCCAAACGTGAACTTATTGGTTAGAAATGCAGCTAATGCCGTTCAGAACAATAGTTTTTCAGAAGCGGGATTAGGTCAAAGTAATATTTTATTTCGAGCTTCAACGGACATTGATTCTCAAAAACCACAAATGTGTGACTCTGGAAAACCGATCGAGGCTAAGCAGGGAAACGTCGGAACAAGTGCTACTTCTTGTGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCGAAGGTCGTACGGAGGATTAACTGCAATGTCGAGCCTTTAGAATATGGAAATGTGATCTCGGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCAAAAGGATTTAAGAGCCGGGTCAAGTATATAAGCGTTTTAGATCCGTCAACTGTATGTTACTATGTTTCTGAAATTCTCGATGTTGGACGGGAAGGACCGCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTTGCAGATGTTGGGAGTTGGTTAGAAACCGAGTCAATCACGAAATCGCGAAGCAACATAAGTTGGGTCGAACAAATCTCCCTCCTCTACAGCCTCCCGGGAGCTTAGATGGGCTAGAAATGTTCGGGTTTACCTCACCGGCAATTGTTCAGGCCATTGAGGCGATCGATCAAAATCGAGTATGTTCAGAAGCAGAAGCAGCAGCTGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCAAACACCAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGCCTCGCCGCTCCGACGTGTCCCTGCAAGAACACACTCCTTCACCATCAGAGCAATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACCGCCTATGCCGGAGGAGCTGGCTCGCTGGCTGCAGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACACCGGATCAGCTGCAAACAGCTGACGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTTGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAG 4041 44.94 MGTELIRVSVEEDSDDFPSVPPGFESYISFPLGKVHNHEKAHVPVSLPTTISESQPVKVETEVEIADVPKVTRALRRKPCINYRQFEYCSDDKLDTKRVDQNFSSRPPLSKGVIRGCPQCNNCQKVVARWRPEESCRPDLEAAPVFYPNEEEFEDTLTYIASIRIKAEPYGICRIVPPSSWKPPCPLKQKHIWENSKFATRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVNRKGVDVTTLNGKNDDAGSRAAERFGFDPGTDFTLESFKKYADDFKSQYFSKPLHDTAKGCNPSMLQENEHWKPSVENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCCQEGYTSDDDKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFDEQPDLLHKLAIVTVKKCRPKLRSFIIEQVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLQKRNTLDNLRWNNVCGKDGVLARAFKTRVELECARRNIPCSSSRAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHANQLCSCAWEEKFFLFRYDISELNILLEALEGKLSAIYRWARQDLGLALSSSRELNSQSSTKSFVNSRLEDFLIRSSLLPTLTAIDSPSHRAEKVSEVTASHLEDKKVISTLNGSGKEVEQKNLKSEVKSENHELVSTNTNALNLVEAKNRMHKMCPENVILLSDDEGDEYKKKISNGLAESSDRFAEVDSKASLCNYNENAILRTPVTDATTMVEKEDRTSNSCQSSVEPLNNKQSPNVNLLVRNAANAVQNNSFSEAGLGQSNILFRASTDIDSQKPQMCDSGKPIEAKQGNVGTSATSCANVDRFLRQKGPRMAKVVRRINCNVEPLEYGNVISGKSWSNSRAIFPKGFKSRVKYISVLDPSTVCYYVSEILDVGREGPLFMVVLEHCPSEVFVHVSACRCWELVRNRVNHEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAIDQNRVCSEAEAAAAAMATATSPIASQLSSAFTSSNTRALIAPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7523251 7537162 - CmaCh12G009590.1 Cma12g00959 305449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00959 1346 ProSiteProfiles JmjN domain profile. 143 184 IPR003349 -
Cma12g00959 1346 SUPERFAMILY Clavaminate synthase-like 358 569 - -
Cma12g00959 1346 Gene3D Photosystem I PsaL, reaction centre subunit XI 1183 1346 IPR036592 GO:0009522|GO:0009538|GO:0015979
Cma12g00959 1346 ProSiteProfiles JmjC domain profile. 357 542 IPR003347 -
Cma12g00959 1346 SUPERFAMILY Photosystem I reaction center subunit XI, PsaL 1189 1344 IPR036592 GO:0009522|GO:0009538|GO:0015979
Cma12g00959 1346 PANTHER LYSINE-SPECIFIC DEMETHYLASE 88 721 - -
Cma12g00959 1346 PANTHER JUMONJI 14-RELATED 789 1122 - -
Cma12g00959 1346 ProSiteProfiles FYR domain FYRC motif profile. 1037 1127 IPR003889 GO:0005634
Cma12g00959 1346 PANTHER JUMONJI 14-RELATED 88 721 - -
Cma12g00959 1346 SMART fyrn_3 991 1035 IPR003888 GO:0005634
Cma12g00959 1346 Pfam F/Y rich C-terminus 1039 1122 IPR003889 GO:0005634
Cma12g00959 1346 Gene3D - 984 1121 - -
Cma12g00959 1346 SMART fyrc_3 1041 1138 IPR003889 GO:0005634
Cma12g00959 1346 PANTHER LYSINE-SPECIFIC DEMETHYLASE 789 1122 - -
Cma12g00959 1346 Pfam F/Y-rich N-terminus 991 1032 IPR003888 GO:0005634
Cma12g00959 1346 Pfam JmjC domain, hydroxylase 390 525 IPR003347 -
Cma12g00959 1346 Pfam jmjN domain 144 177 IPR003349 -
Cma12g00959 1346 Pfam C5HC2 zinc finger 632 682 IPR004198 -
Cma12g00959 1346 SMART cupin_9 357 542 IPR003347 -
Cma12g00959 1346 ProSiteProfiles FYR domain FYRN motif profile. 977 1035 IPR003888 GO:0005634
Cma12g00959 1346 Pfam Photosystem I reaction centre subunit XI 1188 1340 IPR003757 GO:0009522|GO:0009538|GO:0015979
Cma12g00959 1346 Gene3D Cupin 128 526 - -
Cma12g00959 1346 SMART JmjN_1 142 183 IPR003349 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00959 Cma-Chr12:7523251 Cma13g00454 Cma-Chr13:5045463 0 dispersed
Cma05g00760 Cma-Chr5:4416448 Cma12g00959 Cma-Chr12:7523251 0 transposed
Cma08g00273 Cma-Chr8:1591842 Cma12g00959 Cma-Chr12:7523251 0 transposed
Cma15g01224 Cma-Chr15:7738040 Cma12g00959 Cma-Chr12:7523251 4.80E-14 transposed
Cma12g00959 Cma-Chr12:7523251 Cma05g00756 Cma-Chr5:4392593 2.78E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36028 PF02605 PsaL 7.80E-57 No_clan Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00959 - - csv:101208186 1831.61