Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00959 ATGGGGACAGAGCTTATACGAGTTTCTGTTGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTCGAGTCATATATATCATTTCCTCTAGGGAAAGTGCACAATCATGAAAAAGCTCACGTCCCTGTTAGTTTGCCGACGACCATCTCCGAGTCACAACCAGTTAAAGTGGAAACTGAGGTAGAAATTGCTGATGTTCCAAAAGTAACAAGGGCCCTCCGACGTAAACCATGTATAAACTATAGACAATTTGAGTACTGTTCCGACGACAAGCTTGATACTAAGCGCGTTGATCAGAATTTTTCTTCAAGGCCGCCTCTTTCGAAGGGAGTCATCCGTGGATGTCCTCAATGTAATAATTGCCAAAAGGTTGTTGCGAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACCTTGAGGCCGCTCCTGTGTTTTACCCAAATGAAGAGGAATTTGAAGATACTTTGACATATATAGCAAGCATACGAATAAAAGCAGAACCATACGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCGCTGAAGCAGAAACATATTTGGGAGAATTCTAAATTTGCAACTCGTGTCCAAAGGATCGATAAGCTTCAGAATCGTGATTCAATAAGAAAGAACTTTAGGGTTTGCAATCAAATGAGACGGAAAAGGAGGAGGGTTAATCGTAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAATGACGATGCTGGGTCTCGTGCGGCAGAAAGATTTGGATTTGATCCTGGTACAGATTTTACTTTAGAATCGTTTAAAAAATATGCTGACGACTTTAAGTCTCAGTATTTTAGTAAACCACTCCATGATACCGCTAAGGGATGTAATCCCTCCATGCTGCAAGAGAACGAGCATTGGAAACCGTCTGTGGAAAATATTGAGGGCGAATATTGGCGGATGGTAGAGAAGCCAACGGAAGAGATTGAGGTGCTCTATGGGGCTGATTTAGAAACTGGAGAGTTCGGCAGCGGTTTTCCGAAGAGTTGCTGTCAAGAGGGCTATACATCAGATGACGATAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTCCCTGGTTCGGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAATTACTTGCACTGGGGAGATCCCAAAGTATGGTACGGTGTTCCAGGAAACGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGATCTCTTCGACGAACAACCCGATTTACTTCATAAATTGGCAATAGTAACGGTCAAAAAATGTCGGCCTAAACTTCGAAGTTTTATTATTGAGCAGGTTACGCAACTTTCTCCGTCCATATTGAAATCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCGGGATTCAACAGTGGTTTCAATTGTGCTGAGGCAGTTAATGTCGCTCCAGTTGACTGGTTGCCCCACGGTCAAATTGCCGTAGAATTATATCGTGAGCAGGGACGAAGAACTACTATTTCCCACGATAAACTATTGCTCGGTGCAGCGAGGGAAGCTGTGAGAGCACACTGGGAACTTAATTTACAGAAAAGGAACACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGCTGGAGTGTGCACGGAGGAACATTCCGTGCAGTTCTTCTCGGGCAATGAAGATGGAAAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTATCTGCAGTTGGGTGCCGTTGTTCACCAGATAAGTATGTGTGCTTGAATCATGCAAACCAGTTGTGTTCTTGTGCATGGGAAGAGAAATTTTTTCTCTTTCGTTATGATATCAGTGAACTGAACATACTTCTTGAAGCATTGGAAGGAAAACTAAGTGCAATATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCGCTTAGTTCATCGAGGGAGTTGAATTCTCAATCATCAACCAAGTCGTTCGTGAATTCTCGGTTGGAAGATTTCTTGATTCGATCTTCATTATTGCCAACTCTAACTGCTATTGACAGCCCGTCTCACCGTGCCGAAAAGGTATCCGAAGTTACTGCTTCACATCTAGAAGATAAGAAGGTAATTTCTACACTTAATGGATCTGGGAAGGAAGTCGAGCAGAAAAACCTTAAATCTGAAGTGAAAAGCGAAAACCATGAACTCGTTTCAACCAATACAAATGCTCTGAATTTGGTAGAAGCGAAAAATCGAATGCATAAAATGTGTCCTGAAAATGTCATTCTACTAAGTGATGATGAAGGCGATGAGTATAAGAAGAAGATTTCAAATGGTTTAGCTGAAAGTTCAGATCGGTTCGCTGAGGTTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCAATCTTGCGTACCCCGGTGACCGATGCAACAACCATGGTCGAAAAGGAAGACAGAACATCGAATAGTTGTCAATCGAGCGTTGAACCTTTAAATAATAAACAGTCTCCAAACGTGAACTTATTGGTTAGAAATGCAGCTAATGCCGTTCAGAACAATAGTTTTTCAGAAGCGGGATTAGGTCAAAGTAATATTTTATTTCGAGCTTCAACGGACATTGATTCTCAAAAACCACAAATGTGTGACTCTGGAAAACCGATCGAGGCTAAGCAGGGAAACGTCGGAACAAGTGCTACTTCTTGTGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCGAAGGTCGTACGGAGGATTAACTGCAATGTCGAGCCTTTAGAATATGGAAATGTGATCTCGGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCAAAAGGATTTAAGAGCCGGGTCAAGTATATAAGCGTTTTAGATCCGTCAACTGTATGTTACTATGTTTCTGAAATTCTCGATGTTGGACGGGAAGGACCGCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTTGCAGATGTTGGGAGTTGGTTAGAAACCGAGTCAATCACGAAATCGCGAAGCAACATAAGTTGGGTCGAACAAATCTCCCTCCTCTACAGCCTCCCGGGAGCTTAGATGGGCTAGAAATGTTCGGGTTTACCTCACCGGCAATTGTTCAGGCCATTGAGGCGATCGATCAAAATCGAGTATGTTCAGAAGCAGAAGCAGCAGCTGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCAAACACCAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGCCTCGCCGCTCCGACGTGTCCCTGCAAGAACACACTCCTTCACCATCAGAGCAATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACCGCCTATGCCGGAGGAGCTGGCTCGCTGGCTGCAGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACACCGGATCAGCTGCAAACAGCTGACGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTTGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAG 4041 44.94 MGTELIRVSVEEDSDDFPSVPPGFESYISFPLGKVHNHEKAHVPVSLPTTISESQPVKVETEVEIADVPKVTRALRRKPCINYRQFEYCSDDKLDTKRVDQNFSSRPPLSKGVIRGCPQCNNCQKVVARWRPEESCRPDLEAAPVFYPNEEEFEDTLTYIASIRIKAEPYGICRIVPPSSWKPPCPLKQKHIWENSKFATRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVNRKGVDVTTLNGKNDDAGSRAAERFGFDPGTDFTLESFKKYADDFKSQYFSKPLHDTAKGCNPSMLQENEHWKPSVENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCCQEGYTSDDDKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFDEQPDLLHKLAIVTVKKCRPKLRSFIIEQVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLQKRNTLDNLRWNNVCGKDGVLARAFKTRVELECARRNIPCSSSRAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHANQLCSCAWEEKFFLFRYDISELNILLEALEGKLSAIYRWARQDLGLALSSSRELNSQSSTKSFVNSRLEDFLIRSSLLPTLTAIDSPSHRAEKVSEVTASHLEDKKVISTLNGSGKEVEQKNLKSEVKSENHELVSTNTNALNLVEAKNRMHKMCPENVILLSDDEGDEYKKKISNGLAESSDRFAEVDSKASLCNYNENAILRTPVTDATTMVEKEDRTSNSCQSSVEPLNNKQSPNVNLLVRNAANAVQNNSFSEAGLGQSNILFRASTDIDSQKPQMCDSGKPIEAKQGNVGTSATSCANVDRFLRQKGPRMAKVVRRINCNVEPLEYGNVISGKSWSNSRAIFPKGFKSRVKYISVLDPSTVCYYVSEILDVGREGPLFMVVLEHCPSEVFVHVSACRCWELVRNRVNHEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAIDQNRVCSEAEAAAAAMATATSPIASQLSSAFTSSNTRALIAPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7523251 7537162 - CmaCh12G009590.1 Cma12g00959 305449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00959 1346 ProSiteProfiles JmjN domain profile. 143 184 IPR003349 -
Cma12g00959 1346 SUPERFAMILY Clavaminate synthase-like 358 569 - -
Cma12g00959 1346 Gene3D Photosystem I PsaL, reaction centre subunit XI 1183 1346 IPR036592 GO:0009522|GO:0009538|GO:0015979
Cma12g00959 1346 ProSiteProfiles JmjC domain profile. 357 542 IPR003347 -
Cma12g00959 1346 SUPERFAMILY Photosystem I reaction center subunit XI, PsaL 1189 1344 IPR036592 GO:0009522|GO:0009538|GO:0015979
Cma12g00959 1346 PANTHER LYSINE-SPECIFIC DEMETHYLASE 88 721 - -
Cma12g00959 1346 PANTHER JUMONJI 14-RELATED 789 1122 - -
Cma12g00959 1346 ProSiteProfiles FYR domain FYRC motif profile. 1037 1127 IPR003889 GO:0005634
Cma12g00959 1346 PANTHER JUMONJI 14-RELATED 88 721 - -
Cma12g00959 1346 SMART fyrn_3 991 1035 IPR003888 GO:0005634
Cma12g00959 1346 Pfam F/Y rich C-terminus 1039 1122 IPR003889 GO:0005634
Cma12g00959 1346 Gene3D - 984 1121 - -
Cma12g00959 1346 SMART fyrc_3 1041 1138 IPR003889 GO:0005634
Cma12g00959 1346 PANTHER LYSINE-SPECIFIC DEMETHYLASE 789 1122 - -
Cma12g00959 1346 Pfam F/Y-rich N-terminus 991 1032 IPR003888 GO:0005634
Cma12g00959 1346 Pfam JmjC domain, hydroxylase 390 525 IPR003347 -
Cma12g00959 1346 Pfam jmjN domain 144 177 IPR003349 -
Cma12g00959 1346 Pfam C5HC2 zinc finger 632 682 IPR004198 -
Cma12g00959 1346 SMART cupin_9 357 542 IPR003347 -
Cma12g00959 1346 ProSiteProfiles FYR domain FYRN motif profile. 977 1035 IPR003888 GO:0005634
Cma12g00959 1346 Pfam Photosystem I reaction centre subunit XI 1188 1340 IPR003757 GO:0009522|GO:0009538|GO:0015979
Cma12g00959 1346 Gene3D Cupin 128 526 - -
Cma12g00959 1346 SMART JmjN_1 142 183 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00959 - - - csv:101208186 1831.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00959 Cma-Chr12:7523251 Cma13g00454 Cma-Chr13:5045463 0 dispersed
Cma05g00760 Cma-Chr5:4416448 Cma12g00959 Cma-Chr12:7523251 0 transposed
Cma08g00273 Cma-Chr8:1591842 Cma12g00959 Cma-Chr12:7523251 0 transposed
Cma15g01224 Cma-Chr15:7738040 Cma12g00959 Cma-Chr12:7523251 4.80E-14 transposed
Cma12g00959 Cma-Chr12:7523251 Cma05g00756 Cma-Chr5:4392593 2.78E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00760 . 43 1246 JUMONJI Transcription Factor Family AT1G08620 52.8 0.0e+00 1212.6
Cma12g00959 . 1 1122 JUMONJI Transcription Factor Family AT1G08620 53.9 0.0e+00 1160.2
Cma18g00533 . 9 558 JUMONJI Transcription Factor Family AT1G08620 59.9 3.1e-188 656.8
Cma18g00533 . 4 560 JUMONJI Transcription Factor Family AT1G30810 63.8 6.8e-203 704.9
Cma18g00533 . 4 573 JUMONJI Transcription Factor Family AT2G34880 55.0 1.5e-178 624.0
Cma18g00533 . 35 560 JUMONJI Transcription Factor Family AT4G20400 61.7 4.4e-195 679.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36028 PF02605 PsaL 7.80E-57 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00959 Cma_Chr12 FPKM 5.883261 7.627247 15.989556 16.565722 112.861168 111.100372 105.587456 7.715012 7.147858 6.778983