Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00980 ATGGCCACTCTTTCCTGCCAACCCTCCGACTTGGCCACCCTCCTCGGCTCGACCTCCACCGCCAACTCCTCCGCCGTGGCCGACTACCTCTGCTCGAGGTTCAACACGGTCGCCGCCACTCTCACGTCCACCTCCTACGCCCTCGACAACACCTACCTTCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAACTCGGCTTTGCCATGCTATGCGCTGGCTCGGTCCGTGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGATGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTCGGCTTCGCCTTCGCCTTTGGTGCCCCTTCTAACTCCTTCATCGGGCGCCACTTTTTTGGCCTCTCCCATTTCCCTAACCCCTCCACTGATTATAGCTTCTTTCTTTACCAATGGGCCTTTGCTATTGCTGCCGCAGGCATCACAAGCGGCTCAATAGCCGAGAGAACCCAATTCGTAGCCTACCTCATTTACTCGACCGTCCTAACCGGTTTTGTCTACCCCACAGTCTCCCACTGGTTCTGGTCGGCCGATGGCTGGGCTAGCGCAGCTCGACCCAGTAACCTCCTATTCAACTCAGGCGCAATCGACTTCGCTGGGTCAGGCGTGGTCCACATGGTCGGCGGCATAGCCGGCTTGTGGGGCGCCTTAATCGAAGGCCCACGAATCGGCCGATTCGACCGTTCAGGCCGGTCCGTAGCTCTACGTGGCCATAGCGCTTCCTTAGTCGTCCTCGGTTCATTCCTCCTCTGGTTCGGCTGGTACGGGTTCAACCCCGGTTCGTTTCTAACTATCTCCAAATCCTACAACGACGGCCGCCCTTATTACGGCCAATGGAGCGCCATAGGCCGAACCGGAGTCACCACAACATTAGCCGGATGCACAGCCGCGCTAACAACGCTCTTCTCAAAACGGCTGTTAGTTGGACATTGGAACGTAATCGACGTGTGCAACGGCTTATTAGGTGGCTTTGCAGCCATCACAGCCGGGTGCGCCGTAGTGGACCCATGGGCGGCTGTGATATGTGGATTCATAGCGGCTTGGATTCTAATTGGCTTCAACAAGCTAGCCGAGAAGTGCAGCTACGATGACCCATTAGAGGCAGCGCAACTCCACGGCGGATGTGGCGCGTGGGGGTTGATATTCACCGGATTATTCGCGAGAAAGGAGTACGTGGCGGAGGTTTATAAGGCAGGGCGGCCGTTTGGATTGCTTATGGGCGGCGGAGGGAGGCTACTGGCGGCGCAATTGGTGGAGATAGCGGCGATTGTGGGGTGGGTGTCGGTGACGATGGGGGGATTGTTTTATGGGCTGAAGAAGGCGAAATTGCTGAGAATATCGAGGGAGGATGAGATGGCAGGGATGGATATGACGAGGCATGGGGGGTTTGCTTACGTGTACAATGACGAGGATGATCCGTCTGGGAAGCCGGCTGGGTTTATGCTGAGGAGGATTGAGCCAGCCGATGGGAGTCCTAGTCCTGTTGACGACCGTTATCCTTCTGGGATGGCTGCCGTTTGA 1542 57.26 MATLSCQPSDLATLLGSTSTANSSAVADYLCSRFNTVAATLTSTSYALDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSHFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPTVSHWFWSADGWASAARPSNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITAGCAVVDPWAAVICGFIAAWILIGFNKLAEKCSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYKAGRPFGLLMGGGGRLLAAQLVEIAAIVGWVSVTMGGLFYGLKKAKLLRISREDEMAGMDMTRHGGFAYVYNDEDDPSGKPAGFMLRRIEPADGSPSPVDDRYPSGMAAV 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7754385 7757014 - CmaCh12G009800.1 Cma12g00980 305470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00980 513 Gene3D Ammonium transporter AmtB like domains 28 484 IPR029020 -
Cma12g00980 513 SUPERFAMILY Ammonium transporter 47 453 - -
Cma12g00980 513 MobiDBLite consensus disorder prediction 492 513 - -
Cma12g00980 513 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cma12g00980 513 PANTHER AMMONIUM TRANSPORTER 5 505 - -
Cma12g00980 513 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cma12g00980 513 PANTHER AMMONIUM TRANSPORTER 5 505 - -
Cma12g00980 513 TIGRFAM amt: ammonium transporter 49 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01713 Cma-Chr2:9641402 Cma12g00980 Cma-Chr12:7754385 0 dispersed
Cma12g00980 Cma-Chr12:7754385 Cma14g01856 Cma-Chr14:13191687 0 dispersed
Cma12g00980 Cma-Chr12:7754385 Cma08g01041 Cma-Chr8:6522942 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00980 K03320 K07573 csv:101222356 892.493