Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00993 | ATGGAATCGGAGGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTTGTTGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACGGCAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCGGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCATTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACTTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCCGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATCTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCTATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTACATCTGGAAAAGTTAAGTGACACTCAGTGCCAGCCTGAATCACAGCTAAAGTTCATAAGCGAAGCTTGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACTGTTTTTTGAGTACTTGCAAGGCGAGGCTGAGTCCGGGTTGGAACGACTCCACCAATGTGCTGAAAAGGAGTTGCAAGCTTACATAACTGCTGATGGTCCTTCAAGAGAATTTAACGAGTTCCGAACCAAACTTGCTGGACTAACCAGTGTAACTAGGAATTACTTCGAGAATTTAGTACGTGCTCTTGAGAATGGTCTATCAGATGTGGACTCCCAGGGTACCTGCAGCAGAACAGCAAGCTCGAAGAGCATCGGCGGCGGTAGGAGCAAAGGTGGCAAGGGCAAGATGAGTGCATTCCGAGCTAGCGGTTCGAGTCGAACCATTGATGATACTGACCATTGGTCTTGCATTGGAAAACCAATGTATACGATGCCCTTTCGTTCCATCCGTCGTCTGTTCTTGCTGGTCGGAACGTTCACACGCATAATTTATGTTTCAGAAGGAAATGACTCATTTACCAAATTGTTTCAGGCCATTCGATTCCGAACCAGCACTATTGGACCGAGGCAAAAGCATATGAGAAACTGA | 1908 | 44.76 | MESEDELDMHDAHDDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPHSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRLFFEYLQGEAESGLERLHQCAEKELQAYITADGPSREFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSQGTCSRTASSKSIGGGRSKGGKGKMSAFRASGSSRTIDDTDHWSCIGKPMYTMPFRSIRRLFLLVGTFTRIIYVSEGNDSFTKLFQAIRFRTSTIGPRQKHMRN | 635 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7900408 | 7918048 | - | CmaCh12G009930.1 | Cma12g00993 | 305483 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00993 | 635 | Pfam | IBR domain, a half RING-finger domain | 216 | 278 | IPR002867 | - | |
Cma12g00993 | 635 | Pfam | IBR domain, a half RING-finger domain | 295 | 343 | IPR002867 | - | |
Cma12g00993 | 635 | SMART | ibrneu5 | 216 | 278 | IPR002867 | - | |
Cma12g00993 | 635 | SMART | ibrneu5 | 282 | 352 | IPR002867 | - | |
Cma12g00993 | 635 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Cma12g00993 | 635 | ProSiteProfiles | TRIAD supradomain profile. | 143 | 356 | IPR044066 | - | |
Cma12g00993 | 635 | SUPERFAMILY | RING/U-box | 217 | 285 | - | - | |
Cma12g00993 | 635 | MobiDBLite | consensus disorder prediction | 533 | 564 | - | - | |
Cma12g00993 | 635 | CDD | RING-HC_RBR_TRIAD1_like | 147 | 197 | - | - | |
Cma12g00993 | 635 | ProSiteProfiles | Zinc finger RING-type profile. | 147 | 191 | IPR001841 | - | |
Cma12g00993 | 635 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 32 | 546 | IPR031127 | GO:0004842|GO:0016567 | |
Cma12g00993 | 635 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 230 | IPR013083 | - | |
Cma12g00993 | 635 | SUPERFAMILY | RING/U-box | 145 | 225 | - | - | |
Cma12g00993 | 635 | SUPERFAMILY | RING/U-box | 297 | 345 | - | - | |
Cma12g00993 | 635 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Cma12g00993 | 635 | Gene3D | - | 274 | 529 | - | - | |
Cma12g00993 | 635 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 32 | 546 | - | - | |
Cma12g00993 | 635 | Pfam | Ariadne domain | 365 | 528 | IPR045840 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00993 | Cma-Chr12:7900408 | Cma17g00596 | Cma-Chr17:4947053 | 0 | dispersed | |
Cma12g00993 | Cma-Chr12:7900408 | Cma08g00211 | Cma-Chr8:1184895 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00993 | K11968 | - | csv:101218052 | 1070.84 |