Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00993 ATGGAATCGGAGGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTTGTTGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACGGCAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCGGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCATTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACTTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCCGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATCTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCTATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTACATCTGGAAAAGTTAAGTGACACTCAGTGCCAGCCTGAATCACAGCTAAAGTTCATAAGCGAAGCTTGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACTGTTTTTTGAGTACTTGCAAGGCGAGGCTGAGTCCGGGTTGGAACGACTCCACCAATGTGCTGAAAAGGAGTTGCAAGCTTACATAACTGCTGATGGTCCTTCAAGAGAATTTAACGAGTTCCGAACCAAACTTGCTGGACTAACCAGTGTAACTAGGAATTACTTCGAGAATTTAGTACGTGCTCTTGAGAATGGTCTATCAGATGTGGACTCCCAGGGTACCTGCAGCAGAACAGCAAGCTCGAAGAGCATCGGCGGCGGTAGGAGCAAAGGTGGCAAGGGCAAGATGAGTGCATTCCGAGCTAGCGGTTCGAGTCGAACCATTGATGATACTGACCATTGGTCTTGCATTGGAAAACCAATGTATACGATGCCCTTTCGTTCCATCCGTCGTCTGTTCTTGCTGGTCGGAACGTTCACACGCATAATTTATGTTTCAGAAGGAAATGACTCATTTACCAAATTGTTTCAGGCCATTCGATTCCGAACCAGCACTATTGGACCGAGGCAAAAGCATATGAGAAACTGA 1908 44.76 MESEDELDMHDAHDDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPHSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRLFFEYLQGEAESGLERLHQCAEKELQAYITADGPSREFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSQGTCSRTASSKSIGGGRSKGGKGKMSAFRASGSSRTIDDTDHWSCIGKPMYTMPFRSIRRLFLLVGTFTRIIYVSEGNDSFTKLFQAIRFRTSTIGPRQKHMRN 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7900408 7918048 - CmaCh12G009930.1 Cma12g00993 305483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00993 635 Pfam IBR domain, a half RING-finger domain 216 278 IPR002867 -
Cma12g00993 635 Pfam IBR domain, a half RING-finger domain 295 343 IPR002867 -
Cma12g00993 635 SMART ibrneu5 216 278 IPR002867 -
Cma12g00993 635 SMART ibrneu5 282 352 IPR002867 -
Cma12g00993 635 MobiDBLite consensus disorder prediction 1 57 - -
Cma12g00993 635 ProSiteProfiles TRIAD supradomain profile. 143 356 IPR044066 -
Cma12g00993 635 SUPERFAMILY RING/U-box 217 285 - -
Cma12g00993 635 MobiDBLite consensus disorder prediction 533 564 - -
Cma12g00993 635 CDD RING-HC_RBR_TRIAD1_like 147 197 - -
Cma12g00993 635 ProSiteProfiles Zinc finger RING-type profile. 147 191 IPR001841 -
Cma12g00993 635 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 546 IPR031127 GO:0004842|GO:0016567
Cma12g00993 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 230 IPR013083 -
Cma12g00993 635 SUPERFAMILY RING/U-box 145 225 - -
Cma12g00993 635 SUPERFAMILY RING/U-box 297 345 - -
Cma12g00993 635 MobiDBLite consensus disorder prediction 1 59 - -
Cma12g00993 635 Gene3D - 274 529 - -
Cma12g00993 635 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 546 - -
Cma12g00993 635 Pfam Ariadne domain 365 528 IPR045840 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00993 Cma-Chr12:7900408 Cma17g00596 Cma-Chr17:4947053 0 dispersed
Cma12g00993 Cma-Chr12:7900408 Cma08g00211 Cma-Chr8:1184895 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00993 K11968 - csv:101218052 1070.84