Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00993 ATGGAATCGGAGGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTTGTTGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACGGCAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCGGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCATTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACTTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCCGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATCTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCTATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTACATCTGGAAAAGTTAAGTGACACTCAGTGCCAGCCTGAATCACAGCTAAAGTTCATAAGCGAAGCTTGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACTGTTTTTTGAGTACTTGCAAGGCGAGGCTGAGTCCGGGTTGGAACGACTCCACCAATGTGCTGAAAAGGAGTTGCAAGCTTACATAACTGCTGATGGTCCTTCAAGAGAATTTAACGAGTTCCGAACCAAACTTGCTGGACTAACCAGTGTAACTAGGAATTACTTCGAGAATTTAGTACGTGCTCTTGAGAATGGTCTATCAGATGTGGACTCCCAGGGTACCTGCAGCAGAACAGCAAGCTCGAAGAGCATCGGCGGCGGTAGGAGCAAAGGTGGCAAGGGCAAGATGAGTGCATTCCGAGCTAGCGGTTCGAGTCGAACCATTGATGATACTGACCATTGGTCTTGCATTGGAAAACCAATGTATACGATGCCCTTTCGTTCCATCCGTCGTCTGTTCTTGCTGGTCGGAACGTTCACACGCATAATTTATGTTTCAGAAGGAAATGACTCATTTACCAAATTGTTTCAGGCCATTCGATTCCGAACCAGCACTATTGGACCGAGGCAAAAGCATATGAGAAACTGA 1908 44.76 MESEDELDMHDAHDDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPHSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRLFFEYLQGEAESGLERLHQCAEKELQAYITADGPSREFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSQGTCSRTASSKSIGGGRSKGGKGKMSAFRASGSSRTIDDTDHWSCIGKPMYTMPFRSIRRLFLLVGTFTRIIYVSEGNDSFTKLFQAIRFRTSTIGPRQKHMRN 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7900408 7918048 - CmaCh12G009930.1 Cma12g00993 305483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00993 635 Pfam IBR domain, a half RING-finger domain 216 278 IPR002867 -
Cma12g00993 635 Pfam IBR domain, a half RING-finger domain 295 343 IPR002867 -
Cma12g00993 635 SMART ibrneu5 216 278 IPR002867 -
Cma12g00993 635 SMART ibrneu5 282 352 IPR002867 -
Cma12g00993 635 MobiDBLite consensus disorder prediction 1 57 - -
Cma12g00993 635 ProSiteProfiles TRIAD supradomain profile. 143 356 IPR044066 -
Cma12g00993 635 SUPERFAMILY RING/U-box 217 285 - -
Cma12g00993 635 MobiDBLite consensus disorder prediction 533 564 - -
Cma12g00993 635 CDD RING-HC_RBR_TRIAD1_like 147 197 - -
Cma12g00993 635 ProSiteProfiles Zinc finger RING-type profile. 147 191 IPR001841 -
Cma12g00993 635 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 546 IPR031127 GO:0004842|GO:0016567
Cma12g00993 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 230 IPR013083 -
Cma12g00993 635 SUPERFAMILY RING/U-box 145 225 - -
Cma12g00993 635 SUPERFAMILY RING/U-box 297 345 - -
Cma12g00993 635 MobiDBLite consensus disorder prediction 1 59 - -
Cma12g00993 635 Gene3D - 274 529 - -
Cma12g00993 635 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 546 - -
Cma12g00993 635 Pfam Ariadne domain 365 528 IPR045840 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00993 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 1070.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00993 Cma-Chr12:7900408 Cma17g00596 Cma-Chr17:4947053 0 dispersed
Cma12g00993 Cma-Chr12:7900408 Cma08g00211 Cma-Chr8:1184895 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00420 . 164 590 ARIADNE family AT4G34370 71.6 2.6e-182 635.6
Cma20g00867 . 164 589 ARIADNE family AT4G34370 71.8 2.2e-181 632.5
Cma02g00420 . 58 527 ARIADNE family AT2G16090 78.2 1.2e-223 773.1
Cma20g00867 . 58 542 ARIADNE family AT2G16090 76.8 2.3e-222 768.8
Cma20g00867 . 38 543 ARIADNE family AT3G27710 61.8 1.3e-183 640.2
Cma02g00420 . 36 522 ARIADNE family AT3G27710 62.4 8.7e-183 637.5
Cma02g00420 . 47 522 ARIADNE family AT3G27720 54.4 7.3e-144 508.1
Cma20g00867 . 44 522 ARIADNE family AT3G27720 53.6 8.9e-142 501.1
Cma12g00993 . 26 542 ARIADNE family AT1G05890 65.5 4.0e-221 765.0
Cma08g00211 . 56 524 ARIADNE family AT1G05890 73.6 1.3e-216 750.0
Cma17g00596 . 1 577 ARIADNE family AT1G05890 62.4 2.3e-213 739.2
Cma12g00993 . 26 576 ARIADNE family AT1G65430 75.0 6.4e-253 870.5
Cma08g00211 . 16 583 ARIADNE family AT1G65430 69.7 2.1e-243 839.0
Cma17g00596 . 16 631 ARIADNE family AT1G65430 64.3 2.5e-236 815.5
Cma12g00993 . 24 461 ARIADNE family AT2G31780 55.3 3.4e-148 522.3
Cma08g00211 . 53 449 ARIADNE family AT2G31780 57.6 1.5e-143 506.9
Cma17g00596 . 86 496 ARIADNE family AT2G31780 55.7 4.9e-139 491.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00993 Cma_Chr12 FPKM 30.039059 30.71314 40.06834 39.278393 34.684483 39.371239 32.797478 47.520363 46.008083 44.900265