Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00994 ATGGAGCTTCACCAAATCTCTTTAACTTCAAACACTTCAATTTATTTCCTTTCAATCTCTTTCAAAATCCCTTCATTTTTCTTCTCTTCAATGGGTTCAATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACACTCCGACCACCATCACGGTGGCGGCGGTGGCGGTGTTGGTGGCGATGGTCCTTTCACCTCCGACAACATCTCCGGCTCCGCCGTCTGTTTTGACAACCTCCCCTCTTCCTATGGCGTCTATGAACCCTTCCACCGCAATAATCACTCCCAAGATTGGAACAACATGAAGGGTTTAGGGTCAGCTCAAAGTTCGGATTTTTCTGCGTTAATCGAAACCCAACAGCCACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACGCCGTCGTCTACACCAATGCTTCCGGCAACTACATGTTCCAAAATTGTTCCTTGGAGCTTCCATCTGATCCGGCAAACTGCGGCGGTGGAAAAACCAACGATAACGGCAACAATAATGGTAGCTCTATTGGGTTGTCTATGATGAAGACGTGGCTGAGAAATCAACCTGCGCCGTCGCAAGCGGTGGCGAAGTATGGCGGAGATCACGACGGTGCGGTTAGATCAGGTAATATCACAAACGCACATAGTTTATCGCTGTCGATGAACACTGGACCACCGGCGGCGGCTCTGCCACTTCTGACGGCAAACGGTGGCGGAAGTGGCGGCGAAAGCTCGTCCTCCGATAACAAACAAGCTAAATCAGCATCTGCGGAAGTGGACGGTGAAAACGGCGCCGTTGAAGCTGTACCTAGAAAATCTATTGACACATTCGGCCAAAGAACTTCCATATACCGTGGTGTAACCAGACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGCAGACGAGAAGGACAAACAAGAAAAGGAAGACAAGGTGGCTATGACAAAGAAGAGAAGGCTGCAAGAGCCTATGATTTAGCAGCTCTTAAATATTGGGGCTCCACCACCACTACCAATTTTCCAATTAGTGATTATGAGAAAGAAATGGAAGATATGAAGCATATGACAAGGCAGGAATTTGTAGCGTCTCTAAGAAGGAAGAGTAGCGGGTTTTCTCGTGGAGCTTCCATTTATCGTGGAGTAACGAGACACCATCAGCATGGGAGATGGCAAGCGAGAATAGGGCGAGTTGCTGGGAACAAAGACCTCTACTTGGGAACTTTCAGCACACAAGAGGAAGCAGCAGAAGCATATGACACGGCGGCAATAAAGTTTCGGGGACTAAATGCGGTGACCAACTTCGATATGAGTCGTTATGATGTTAAAGCCATTCTCGAAAGCAATACATTACCTATCGGTGGCGCTGCAAAACGTTTAAAAGATATCGTTCACTCTGATATTGATCCACAACGAAGCGACGAGAACATAACTTCACATCTCTCCGATGGAATAATCACCGCCGCCCCTTACAGTGGCGGCGGATGGCCAAGTTTTGCCTTCCACCACCATCCATACGCCTTCCACTACCCGTACGCCGCTACACAGCAACGGCTATGGTGCAAGCAAGAGAACGACGCGACCGTCGCCGCTGCAGACAACTTCTTCCCACACGGCGGAGCCATGGACTCAATGGATCATGGGGTTTACGGTGGTGGCGTAAGCGGAGACGGGTACGGCGGGAACTTCCTGATTTCGATGGCGGCAGCTGGGGCGGAAGCTGGGAGCAGCAGCAGCAACAACAATGGTGGTGGGTTGGGAGAAATTGGAGAAGTGAATTTGTTTGGATGTTCTTCTAACGTGGACGATCCATACCATGCAACAAGATCCACCACCAATTTATACGATTATAACAATTCCTCTCATCAGCTGCCACCGCCCACGACGGCGCTACAGCAATGCAACAACTGGCTTCCACCAGCCAGGACGGTTTGTCACGGCGGAGCTCCGCCGCCTTTTACCATATGGAATGACACTTAA 2010 49.7 MELHQISLTSNTSIYFLSISFKIPSFFFSSMGSMNWLGFSLSPQEQHSDHHHGGGGGGVGGDGPFTSDNISGSAVCFDNLPSSYGVYEPFHRNNHSQDWNNMKGLGSAQSSDFSALIETQQPPKLENFLGHHSFTDHDHAVVYTNASGNYMFQNCSLELPSDPANCGGGKTNDNGNNNGSSIGLSMMKTWLRNQPAPSQAVAKYGGDHDGAVRSGNITNAHSLSLSMNTGPPAAALPLLTANGGGSGGESSSSDNKQAKSASAEVDGENGAVEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGSTTTTNFPISDYEKEMEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDTAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIVHSDIDPQRSDENITSHLSDGIITAAPYSGGGWPSFAFHHHPYAFHYPYAATQQRLWCKQENDATVAAADNFFPHGGAMDSMDHGVYGGGVSGDGYGGNFLISMAAAGAEAGSSSSNNNGGGLGEIGEVNLFGCSSNVDDPYHATRSTTNLYDYNNSSHQLPPPTTALQQCNNWLPPARTVCHGGAPPPFTIWNDT 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7929517 7933432 + CmaCh12G009940.1 Cma12g00994 305484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00994 669 PRINTS Ethylene responsive element binding protein signature 290 301 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 PRINTS Ethylene responsive element binding protein signature 428 448 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 SUPERFAMILY DNA-binding domain 387 448 IPR016177 GO:0003677
Cma12g00994 669 PANTHER BNAC02G44180D PROTEIN 34 545 - -
Cma12g00994 669 MobiDBLite consensus disorder prediction 244 262 - -
Cma12g00994 669 ProSiteProfiles AP2/ERF domain profile. 388 446 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 MobiDBLite consensus disorder prediction 236 271 - -
Cma12g00994 669 MobiDBLite consensus disorder prediction 45 64 - -
Cma12g00994 669 CDD AP2 288 354 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 SUPERFAMILY DNA-binding domain 288 354 IPR016177 GO:0003677
Cma12g00994 669 SMART rav1_2 388 452 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 SMART rav1_2 289 358 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 Gene3D AP2/ERF domain 289 354 IPR036955 GO:0003700|GO:0006355
Cma12g00994 669 Gene3D AP2/ERF domain 388 448 IPR036955 GO:0003700|GO:0006355
Cma12g00994 669 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 545 - -
Cma12g00994 669 CDD AP2 387 448 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 Pfam AP2 domain 388 438 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 Pfam AP2 domain 289 344 IPR001471 GO:0003700|GO:0006355
Cma12g00994 669 ProSiteProfiles AP2/ERF domain profile. 289 352 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00388 Cma12g00994 CCT
Cma11g00388 Cma12g00994 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00388 Cma-Chr11:1927730 Cma12g00994 Cma-Chr12:7929517 1.38E-123 dispersed
Cma12g00614 Cma-Chr12:3226740 Cma12g00994 Cma-Chr12:7929517 3.27E-112 dispersed
Cma12g00994 Cma-Chr12:7929517 Cma20g00072 Cma-Chr20:315450 3.75E-129 dispersed
Cma12g00994 Cma-Chr12:7929517 Cma05g00792 Cma-Chr5:5023853 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36031 PF00847 AP2 2.80E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00994 K09285 - csv:101219473 949.118