Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00994 | ATGGAGCTTCACCAAATCTCTTTAACTTCAAACACTTCAATTTATTTCCTTTCAATCTCTTTCAAAATCCCTTCATTTTTCTTCTCTTCAATGGGTTCAATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACACTCCGACCACCATCACGGTGGCGGCGGTGGCGGTGTTGGTGGCGATGGTCCTTTCACCTCCGACAACATCTCCGGCTCCGCCGTCTGTTTTGACAACCTCCCCTCTTCCTATGGCGTCTATGAACCCTTCCACCGCAATAATCACTCCCAAGATTGGAACAACATGAAGGGTTTAGGGTCAGCTCAAAGTTCGGATTTTTCTGCGTTAATCGAAACCCAACAGCCACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACGCCGTCGTCTACACCAATGCTTCCGGCAACTACATGTTCCAAAATTGTTCCTTGGAGCTTCCATCTGATCCGGCAAACTGCGGCGGTGGAAAAACCAACGATAACGGCAACAATAATGGTAGCTCTATTGGGTTGTCTATGATGAAGACGTGGCTGAGAAATCAACCTGCGCCGTCGCAAGCGGTGGCGAAGTATGGCGGAGATCACGACGGTGCGGTTAGATCAGGTAATATCACAAACGCACATAGTTTATCGCTGTCGATGAACACTGGACCACCGGCGGCGGCTCTGCCACTTCTGACGGCAAACGGTGGCGGAAGTGGCGGCGAAAGCTCGTCCTCCGATAACAAACAAGCTAAATCAGCATCTGCGGAAGTGGACGGTGAAAACGGCGCCGTTGAAGCTGTACCTAGAAAATCTATTGACACATTCGGCCAAAGAACTTCCATATACCGTGGTGTAACCAGACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGCAGACGAGAAGGACAAACAAGAAAAGGAAGACAAGGTGGCTATGACAAAGAAGAGAAGGCTGCAAGAGCCTATGATTTAGCAGCTCTTAAATATTGGGGCTCCACCACCACTACCAATTTTCCAATTAGTGATTATGAGAAAGAAATGGAAGATATGAAGCATATGACAAGGCAGGAATTTGTAGCGTCTCTAAGAAGGAAGAGTAGCGGGTTTTCTCGTGGAGCTTCCATTTATCGTGGAGTAACGAGACACCATCAGCATGGGAGATGGCAAGCGAGAATAGGGCGAGTTGCTGGGAACAAAGACCTCTACTTGGGAACTTTCAGCACACAAGAGGAAGCAGCAGAAGCATATGACACGGCGGCAATAAAGTTTCGGGGACTAAATGCGGTGACCAACTTCGATATGAGTCGTTATGATGTTAAAGCCATTCTCGAAAGCAATACATTACCTATCGGTGGCGCTGCAAAACGTTTAAAAGATATCGTTCACTCTGATATTGATCCACAACGAAGCGACGAGAACATAACTTCACATCTCTCCGATGGAATAATCACCGCCGCCCCTTACAGTGGCGGCGGATGGCCAAGTTTTGCCTTCCACCACCATCCATACGCCTTCCACTACCCGTACGCCGCTACACAGCAACGGCTATGGTGCAAGCAAGAGAACGACGCGACCGTCGCCGCTGCAGACAACTTCTTCCCACACGGCGGAGCCATGGACTCAATGGATCATGGGGTTTACGGTGGTGGCGTAAGCGGAGACGGGTACGGCGGGAACTTCCTGATTTCGATGGCGGCAGCTGGGGCGGAAGCTGGGAGCAGCAGCAGCAACAACAATGGTGGTGGGTTGGGAGAAATTGGAGAAGTGAATTTGTTTGGATGTTCTTCTAACGTGGACGATCCATACCATGCAACAAGATCCACCACCAATTTATACGATTATAACAATTCCTCTCATCAGCTGCCACCGCCCACGACGGCGCTACAGCAATGCAACAACTGGCTTCCACCAGCCAGGACGGTTTGTCACGGCGGAGCTCCGCCGCCTTTTACCATATGGAATGACACTTAA | 2010 | 49.7 | MELHQISLTSNTSIYFLSISFKIPSFFFSSMGSMNWLGFSLSPQEQHSDHHHGGGGGGVGGDGPFTSDNISGSAVCFDNLPSSYGVYEPFHRNNHSQDWNNMKGLGSAQSSDFSALIETQQPPKLENFLGHHSFTDHDHAVVYTNASGNYMFQNCSLELPSDPANCGGGKTNDNGNNNGSSIGLSMMKTWLRNQPAPSQAVAKYGGDHDGAVRSGNITNAHSLSLSMNTGPPAAALPLLTANGGGSGGESSSSDNKQAKSASAEVDGENGAVEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGSTTTTNFPISDYEKEMEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDTAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIVHSDIDPQRSDENITSHLSDGIITAAPYSGGGWPSFAFHHHPYAFHYPYAATQQRLWCKQENDATVAAADNFFPHGGAMDSMDHGVYGGGVSGDGYGGNFLISMAAAGAEAGSSSSNNNGGGLGEIGEVNLFGCSSNVDDPYHATRSTTNLYDYNNSSHQLPPPTTALQQCNNWLPPARTVCHGGAPPPFTIWNDT | 669 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7929517 | 7933432 | + | CmaCh12G009940.1 | Cma12g00994 | 305484 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00994 | 669 | PRINTS | Ethylene responsive element binding protein signature | 290 | 301 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | PRINTS | Ethylene responsive element binding protein signature | 428 | 448 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | SUPERFAMILY | DNA-binding domain | 387 | 448 | IPR016177 | GO:0003677 | |
Cma12g00994 | 669 | PANTHER | BNAC02G44180D PROTEIN | 34 | 545 | - | - | |
Cma12g00994 | 669 | MobiDBLite | consensus disorder prediction | 244 | 262 | - | - | |
Cma12g00994 | 669 | ProSiteProfiles | AP2/ERF domain profile. | 388 | 446 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | MobiDBLite | consensus disorder prediction | 236 | 271 | - | - | |
Cma12g00994 | 669 | MobiDBLite | consensus disorder prediction | 45 | 64 | - | - | |
Cma12g00994 | 669 | CDD | AP2 | 288 | 354 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | SUPERFAMILY | DNA-binding domain | 288 | 354 | IPR016177 | GO:0003677 | |
Cma12g00994 | 669 | SMART | rav1_2 | 388 | 452 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | SMART | rav1_2 | 289 | 358 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | Gene3D | AP2/ERF domain | 289 | 354 | IPR036955 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | Gene3D | AP2/ERF domain | 388 | 448 | IPR036955 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 34 | 545 | - | - | |
Cma12g00994 | 669 | CDD | AP2 | 387 | 448 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | Pfam | AP2 domain | 388 | 438 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | Pfam | AP2 domain | 289 | 344 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00994 | 669 | ProSiteProfiles | AP2/ERF domain profile. | 289 | 352 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00388 | Cma12g00994 | CCT | |
Cma11g00388 | Cma12g00994 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00388 | Cma-Chr11:1927730 | Cma12g00994 | Cma-Chr12:7929517 | 1.38E-123 | dispersed | |
Cma12g00614 | Cma-Chr12:3226740 | Cma12g00994 | Cma-Chr12:7929517 | 3.27E-112 | dispersed | |
Cma12g00994 | Cma-Chr12:7929517 | Cma20g00072 | Cma-Chr20:315450 | 3.75E-129 | dispersed | |
Cma12g00994 | Cma-Chr12:7929517 | Cma05g00792 | Cma-Chr5:5023853 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36031 | PF00847 | AP2 | 2.80E-09 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00994 | K09285 | - | csv:101219473 | 949.118 |