Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01005 ATGGATAGCCCGACGACGACACCAAGCTCGGCTCCTAATTCGTCACCAGTCTCGAATCCTGGTTCGAATGATGAAACCCCGCGTGTTAAATTCCTGTGTAGTTTCTTGGGAAATATAATGCCTCGGCCCCAAGATAGTAAGCTTCGGTATGTTGGGGGTGAGACGAGGATTGTGAGCGTTCCAAGGGATACGGCATATGAGGAGTTGATGATTAAGATGAAGGAACTTTATGAAGGGGCTGCTGTATTGAAGTACCAGCAACCGGATGAGGATCTTGATGCTCTTGTGTCTGTTGTGAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCGGGAGATGGGTTCACTAGGCTCAGGATATTCTTGTTTTCGCATCCCGATCAAGATGGTTCTTTGTCCTTTGTCGATGGCGATGAGAGGAATACCGAGAGACGATATGTGGATGCCCTTAATAATTCAAATGACATTAATGATTTTGTTAGACAGCAGCAGCCAGATTCCCCTGTAATCAATGGCATAGACGATGTGCACGGGTCAGAACATTTTTTGAATCCGTTGAATATCGAAGGTAGTCTTCACTCCCAGAGGAGTTGCGAGCCGTTGTCACAATATCACCTGCATCAGCTCACAATTCCTCATGTTGGATCTGGGCAGCAACAACAATCTGTAACTCAAAGGTATGGTGAAATGGAAGCTCCATGGAGTCCTGCTTTACTTTCACCCAGGCATCATGGTCCGTTTGATTCAAGACCAGTCAGCGAATATCCATCTTCTCCATCCGCACGGTACCGTATGCCATTCCCGGAGTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGCGAGGCAGCAAATGACTCACCAACACATGTATGAACATCAACCGCTATATAACGAGAATGTTGTCTGGATGCCAAATGGAACAATTACTGAAAAGTCAGGTTTTCCGGGTAATATATTACATGGACATGGTGTTCCTGATGCGAATAGTTCTTGTGAAAAGTGCCGAGCCAATTTCCATCGGTATCAAACACCCATGGAGCAAGCTACGATGTTAAATGGACTTCCTCCTGAATACCCTCAGAATAGGGAGGCCCTGATGCAAAAAGCCGACATGAAGTTTCGTCATGGTAATTTCCCAAATGAGCAAAATATTAACGATCATCGACCTGCTTATAATGAGACACCTCCCCACGAGAGAGGATGGATTACGCAACATCAGATGAGTGTTCGGGGGGGTGACACGAGAGCACATGTTTCTGGAGTGGGACGATTGAATGATCACTACATTGTGGATGGTTCTGGTTCAAATTTTCCTCCTACACAAAGTAATGTAACTGATGGCTGCCATGCTTCCCCGAATTTTCATGATGAGGTGTTCCGTGACCCGGTTTTGCCTAGTGGACCGCATATGTGTGTTCCTCCTGCTGAAGATCGTGGTGTTGGCTATATGAATATGCCGTATGGATATGGAGGAGATCTTCCGATGGCACACAGGCAAATGCCGCCTGGAAATGCCTTATGGCGAAATGTTCAGAATCCATTGCATATTTCTCCCCCTTATGATGGACCCGTTTCCCTTCAGCACGGGAATGCTACTGTAAATCCGGGATATATCAGAGGCATGCAGGAGGGTAGTCCACGGATTCATATCGGTATGGACCACCAAAATCCTTGGAATGAATCCTCACAAAAAATGTTGGGTATCGACGGAGCAACTGGTTCAGAGCATTTACCTCCGCATGTTTCTAAGACCAACTCCACTATTATGGAACATATCCTACCACATCTAGATAAGATAAACCTGGTCGACTCGTCTGCACAGTGGTCGGATTCTTCTTCAGGATTTGTTCATGAAAAAGTTGTTGCACCGTTTCATTCTAGCCAAAATCATCAACCAAGCGCGGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAATTGTGCCTGTAGAAGGAGACAGACACGTCGTAACCGATATGGGGAAAGTTGACATCGTTGATGTACACACTGTTTCTTATCCAGAGCAGAAAAACACCAATGATACATATTCCAAGGTCGCACCCCCTGAACTGTTAAATTCAAATTGCATGAACGATGCAGTAGAGAACGGTGATAGCTTGGAACCAGCCGAGGAGACTCTAGAAGAGCCAAAACTTTCTGTCGACCGTCTGAGATTTTTACCCGAGTTGATTGCATCCGTGAAGAGAGCAGCATTGGAAGTATCTGAAGGGGCAATGATTGAAGAAACAGCTTCAGGGAGACCTGATTCAATCGACAAAAAAGAGGCTGCAAATGAGAATGCCCATGAGAAACCCGAGTTGGAAACTGAGAATGACAATCAAAGCTCTGGAATTGAGCCAACAAAGGCAGAAGCAGAAGCAATATCAAGAGGATTACAAGTAATGATGCTCATCTTCTTTCACCTCACAATTAAAAACGATGATCTGGAGGAGATTCGTGAACTCGGGTCTGGAACCTATGGTGCTGTTTATCATGGGAAATGGAGAGGTTCGGATGTCGCAATAAAGAGGATCAAAGCTAGCTGTTTTTCTGGTCGGCCCTCGGAAAGGGAACGTCTGATAGCGGATTTTTGGAAGGAAGCTTTGATGTTAAGTTCTTTACACCATCCAAACGTTGTCGCCTTCTACGGTATCGTTCGTGATGGACCTGATGGGTCCTTAGCAACAGTAACAGAATTCATGGTAAATGGATCGTTGAAACAATTTTTGCACAAGAAGGACAGGACCATCGATCGTCGTAAACGACTCATTATAGCGATGGATGCTGCATTTGGGATGGAATATTTGCACGGGAAGAACATTGTACATTTCGATTTGAAATGTGAAAACCTTTTAGTGAATATGAGAGACCCTCATAGGCCTGTTTGCAAGATTGGTGATTTGGGGTTGTCAAAGGTGAGACAACACACGTTAGTATCGGGAGGGGTTCGCGGAACTTTGCCATGGATGGCACCGGAGCTTCTTAGCGGGAAAAGTAATATGGTCACGGAGAAGATTGATGTTTACTCGTTTGGGATCGTTATGTGGGAACTGCTCACGGGAGACGAACCATATTCAGATATGCACTGTGCTTCTATAATCGGAGGAATCGTGCACAATTCGTTACGTCCAGAAATCCCGACATGGTGCGACCCAGAATGGAAGGCTTTAATGTTGAGCTGTTGGGACTCGGACCCAGCAACGAGGCCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAACATGGCAGCTGCAATGAATGTGAAATAG 3297 45.04 MDSPTTTPSSAPNSSPVSNPGSNDETPRVKFLCSFLGNIMPRPQDSKLRYVGGETRIVSVPRDTAYEELMIKMKELYEGAAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPDQDGSLSFVDGDERNTERRYVDALNNSNDINDFVRQQQPDSPVINGIDDVHGSEHFLNPLNIEGSLHSQRSCEPLSQYHLHQLTIPHVGSGQQQQSVTQRYGEMEAPWSPALLSPRHHGPFDSRPVSEYPSSPSARYRMPFPELPDKYLERMPEDYARQQMTHQHMYEHQPLYNENVVWMPNGTITEKSGFPGNILHGHGVPDANSSCEKCRANFHRYQTPMEQATMLNGLPPEYPQNREALMQKADMKFRHGNFPNEQNINDHRPAYNETPPHERGWITQHQMSVRGGDTRAHVSGVGRLNDHYIVDGSGSNFPPTQSNVTDGCHASPNFHDEVFRDPVLPSGPHMCVPPAEDRGVGYMNMPYGYGGDLPMAHRQMPPGNALWRNVQNPLHISPPYDGPVSLQHGNATVNPGYIRGMQEGSPRIHIGMDHQNPWNESSQKMLGIDGATGSEHLPPHVSKTNSTIMEHILPHLDKINLVDSSAQWSDSSSGFVHEKVVAPFHSSQNHQPSAVSVVNEAMMMERKIVPVEGDRHVVTDMGKVDIVDVHTVSYPEQKNTNDTYSKVAPPELLNSNCMNDAVENGDSLEPAEETLEEPKLSVDRLRFLPELIASVKRAALEVSEGAMIEETASGRPDSIDKKEAANENAHEKPELETENDNQSSGIEPTKAEAEAISRGLQVMMLIFFHLTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFSGRPSERERLIADFWKEALMLSSLHHPNVVAFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPHRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVHNSLRPEIPTWCDPEWKALMLSCWDSDPATRPSFSEISQKLRNMAAAMNVK 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8025850 8032027 + CmaCh12G010050.1 Cma12g01005 305495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01005 1098 SUPERFAMILY CAD & PB1 domains 45 134 - -
Cma12g01005 1098 CDD PB1_UP2 32 128 - -
Cma12g01005 1098 SUPERFAMILY Protein kinase-like (PK-like) 802 1086 IPR011009 -
Cma12g01005 1098 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 19 1098 - -
Cma12g01005 1098 ProSiteProfiles Protein kinase domain profile. 825 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01005 1098 MobiDBLite consensus disorder prediction 1 25 - -
Cma12g01005 1098 ProSitePatterns Serine/Threonine protein kinases active-site signature. 950 962 IPR008271 GO:0004672|GO:0006468
Cma12g01005 1098 Pfam Protein tyrosine and serine/threonine kinase 826 1088 IPR001245 GO:0004672|GO:0006468
Cma12g01005 1098 ProSitePatterns Protein kinases ATP-binding region signature. 831 852 IPR017441 GO:0005524
Cma12g01005 1098 MobiDBLite consensus disorder prediction 762 786 - -
Cma12g01005 1098 Gene3D - 47 130 - -
Cma12g01005 1098 MobiDBLite consensus disorder prediction 757 795 - -
Cma12g01005 1098 Pfam PB1 domain 45 128 IPR000270 GO:0005515
Cma12g01005 1098 CDD STKc_MAP3K-like 831 1088 - -
Cma12g01005 1098 Gene3D Phosphorylase Kinase; domain 1 815 911 - -
Cma12g01005 1098 PRINTS Tyrosine kinase catalytic domain signature 1059 1081 IPR001245 GO:0004672|GO:0006468
Cma12g01005 1098 PRINTS Tyrosine kinase catalytic domain signature 944 962 IPR001245 GO:0004672|GO:0006468
Cma12g01005 1098 PRINTS Tyrosine kinase catalytic domain signature 907 920 IPR001245 GO:0004672|GO:0006468
Cma12g01005 1098 PRINTS Tyrosine kinase catalytic domain signature 1015 1037 IPR001245 GO:0004672|GO:0006468
Cma12g01005 1098 PANTHER SERINE-THREONINE PROTEIN KINASE 19 1098 - -
Cma12g01005 1098 SMART serkin_6 825 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01005 1098 Gene3D Transferase(Phosphotransferase) domain 1 912 1098 - -
Cma12g01005 1098 SMART PB1_new 43 128 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00673 Cma12g01005 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01005 Cma-Chr12:8025850 Cma13g00852 Cma-Chr13:7026725 1.46E-28 dispersed
Cma12g01005 Cma-Chr12:8025850 Cma05g00673 Cma-Chr5:3463747 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68969 PF07714 PK_Tyr_Ser-Thr 1.50E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01005 - - csv:101215475 1856.65