Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01028 ATGTGTTGCGACGGCGAAGGGCTCCTTTTGGTCCAAAAGGTCTCAGAACTTTACCACAAAATCTCCACTCTCCAAAGCCTCCAACCCTCCAAACATGTCAACTCCCTCTTCTCCCAGCTCGTCCTCACCTGCACCCCTCCGCCGCCTCCTCCACCGTCTCCGCCGCTCATCGACATCTCCAAGCTCAGCTCGACGGTCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGGCCAAGCCGAGGGCTTACTCGAGCACCATTACTCGACTATCTTAGCCTCCCACCAGAACCCTCTTGACCATCTCTCCCTTTTCCCTTACTACTCCAACTACCTCAAACTAACCCATCTCGAATTCTCCATTCTGACTCGTTACATATCCCCTGCCCTGCCGTCTAAAGTGGCATTCATCGGCTCAGGTGCGCTCCCATTCTCGTCCATCATCATGGCTTTGAAATACCTCCCCACGACCGAGTTTCACAATTTTGATGTTGACTCATCCGCTAATGCCAAGGCTACAATGCTCGTGGCAAGTGACGTGGACTTGTCGAGGCGGATGACATTCCACACTACCGATATCATGGACGTCACCTCGGATATGTTGAGAGAGTTCGAGGTGGTGTTTTTGGCAGCGTTGGTGGGCATGGAGAAAGAGGAGAAAGTTAAGGTAATCGAGCATTTACGAAAGAACATGACTAGTGGCTCGTTGTTGATGTTGAGAAGTGCGTATGGTGCACGGGCATTTCTTTATCCAGTGGTGGAAGCTTCTGATCTTCGAGGGTTTGAGATTCTTACGACGTTTCATCCTACTGATGATGTTGTCAATTCGATCGTGTTGGCTCGATTATAA 849 50.53 MCCDGEGLLLVQKVSELYHKISTLQSLQPSKHVNSLFSQLVLTCTPPPPPPPSPPLIDISKLSSTVQTMRSHLIKLCGQAEGLLEHHYSTILASHQNPLDHLSLFPYYSNYLKLTHLEFSILTRYISPALPSKVAFIGSGALPFSSIIMALKYLPTTEFHNFDVDSSANAKATMLVASDVDLSRRMTFHTTDIMDVTSDMLREFEVVFLAALVGMEKEEKVKVIEHLRKNMTSGSLLMLRSAYGARAFLYPVVEASDLRGFEILTTFHPTDDVVNSIVLARL 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8172889 8173737 - CmaCh12G010280.1 Cma12g01028 305518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01028 282 Pfam Nicotianamine synthase protein 9 281 IPR004298 GO:0030410|GO:0030418
Cma12g01028 282 Gene3D Vaccinia Virus protein VP39 56 282 IPR029063 -
Cma12g01028 282 PANTHER NICOTIANAMINE SYNTHASE 3 3 281 IPR004298 GO:0030410|GO:0030418
Cma12g01028 282 PANTHER SYNTHASE, PUTATIVE-RELATED 3 281 - -
Cma12g01028 282 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 2 282 IPR004298 GO:0030410|GO:0030418
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01235 Cma12g01028 CCT
Cma05g01074 Cma12g01028 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01235 Cma-Chr11:8123732 Cma12g01028 Cma-Chr12:8172889 1.08E-111 dispersed
Cma12g01028 Cma-Chr12:8172889 Cma05g01074 Cma-Chr5:8505799 3.61E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01028 K05953 - csv:101219339 431.795