Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01028 | ATGTGTTGCGACGGCGAAGGGCTCCTTTTGGTCCAAAAGGTCTCAGAACTTTACCACAAAATCTCCACTCTCCAAAGCCTCCAACCCTCCAAACATGTCAACTCCCTCTTCTCCCAGCTCGTCCTCACCTGCACCCCTCCGCCGCCTCCTCCACCGTCTCCGCCGCTCATCGACATCTCCAAGCTCAGCTCGACGGTCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGGCCAAGCCGAGGGCTTACTCGAGCACCATTACTCGACTATCTTAGCCTCCCACCAGAACCCTCTTGACCATCTCTCCCTTTTCCCTTACTACTCCAACTACCTCAAACTAACCCATCTCGAATTCTCCATTCTGACTCGTTACATATCCCCTGCCCTGCCGTCTAAAGTGGCATTCATCGGCTCAGGTGCGCTCCCATTCTCGTCCATCATCATGGCTTTGAAATACCTCCCCACGACCGAGTTTCACAATTTTGATGTTGACTCATCCGCTAATGCCAAGGCTACAATGCTCGTGGCAAGTGACGTGGACTTGTCGAGGCGGATGACATTCCACACTACCGATATCATGGACGTCACCTCGGATATGTTGAGAGAGTTCGAGGTGGTGTTTTTGGCAGCGTTGGTGGGCATGGAGAAAGAGGAGAAAGTTAAGGTAATCGAGCATTTACGAAAGAACATGACTAGTGGCTCGTTGTTGATGTTGAGAAGTGCGTATGGTGCACGGGCATTTCTTTATCCAGTGGTGGAAGCTTCTGATCTTCGAGGGTTTGAGATTCTTACGACGTTTCATCCTACTGATGATGTTGTCAATTCGATCGTGTTGGCTCGATTATAA | 849 | 50.53 | MCCDGEGLLLVQKVSELYHKISTLQSLQPSKHVNSLFSQLVLTCTPPPPPPPSPPLIDISKLSSTVQTMRSHLIKLCGQAEGLLEHHYSTILASHQNPLDHLSLFPYYSNYLKLTHLEFSILTRYISPALPSKVAFIGSGALPFSSIIMALKYLPTTEFHNFDVDSSANAKATMLVASDVDLSRRMTFHTTDIMDVTSDMLREFEVVFLAALVGMEKEEKVKVIEHLRKNMTSGSLLMLRSAYGARAFLYPVVEASDLRGFEILTTFHPTDDVVNSIVLARL | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8172889 | 8173737 | - | CmaCh12G010280.1 | Cma12g01028 | 305518 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01028 | 282 | Pfam | Nicotianamine synthase protein | 9 | 281 | IPR004298 | GO:0030410|GO:0030418 | |
Cma12g01028 | 282 | Gene3D | Vaccinia Virus protein VP39 | 56 | 282 | IPR029063 | - | |
Cma12g01028 | 282 | PANTHER | NICOTIANAMINE SYNTHASE 3 | 3 | 281 | IPR004298 | GO:0030410|GO:0030418 | |
Cma12g01028 | 282 | PANTHER | SYNTHASE, PUTATIVE-RELATED | 3 | 281 | - | - | |
Cma12g01028 | 282 | ProSiteProfiles | Nicotianamine synthase (NAS)-like family profile. | 2 | 282 | IPR004298 | GO:0030410|GO:0030418 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01235 | Cma12g01028 | CCT | |
Cma05g01074 | Cma12g01028 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01235 | Cma-Chr11:8123732 | Cma12g01028 | Cma-Chr12:8172889 | 1.08E-111 | dispersed | |
Cma12g01028 | Cma-Chr12:8172889 | Cma05g01074 | Cma-Chr5:8505799 | 3.61E-109 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01028 | K05953 | - | csv:101219339 | 431.795 |