Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01035 ATGGGTGGCTTGAGTGAGGGTCTAATACAGCTGTTGATACCTGCAGCTGCCTTGCTTGGTATTGGATTTGCCTTTCTTCAATGGGTTTTGGTATCAAGGGTTAAGGTTTCTGGGTATGCTGATGATGAAAGCCAGGAGAACAATTTGATTGAAACTGGACATGAGGAAGGTTTCGAGGATTTTGAGGTTGTCGCCAAGTGCGCTGAAATCCAGAAGGCTATTTCTGTTGGAGCAACCTCATTTTTATTCACCCAGTACAAGTACCTTGTTGTCTTCATGGGAGCATTTGGAGCCATTATTTTTCTGTTCCTTGGCTCAGTCAAGAGCTTCAGCACCAAAAGTGAACCTTGCACATACAACAAGGGACAGATGTGTAAACCAGCTCTAGCCAATGCCATCTTCAGCACAATTGCCTTCTTCCTAGGCGCTCTCACCTCAGTTCTATCCGGTTTCCTTGGAATGAAGATAGCAACTTATGCAAACGCTCGAACGAGCCTAGAAGCACGAAAAGGCATTGGAAAAGCATTCACTATCGCCTTTCGTTCGGGTGCTGTCATGGGATTCCTTCTAGCTGCCAATGGCCTCCTTGTGTTATATGCCTCCATCAATTTGTTTAAGCTGTATTATGGCGATGATTGGGAAGGATTATACGAGTCTATCACCGGGTACGGTCTTGGAGGTTCTTCAATGGCGTTGTTTGGACGAGTTGGGGGTGGCATATACACAAAAGCAGCTGATGTTGGAGCTGATCTTGTCGGGAAAATCGAAAAGAATATCCCGGAAGACGATCCACGAAATCCTGCTGTTATAGCTGACAATGTGGGTGACAATGTAGGAGATATAGCAGGAATGGGATCTGATTTATTTGGATCATATGCAGAATCAACCTGTGCTGCACTTTTCGTGGCATCGATATCGTCGTTCGGCTTCACACATAACTATGCAGCCATGTCCTACCCTCTACTTATAAGCTCAATGGGCATTGTGATTTGCTTAATAACTACACTTTTTGCAACCGATCTCGTTGAGGTTAAGAAAGTAAGTGAAATCGAACCGTCGTTAAAGCGACAACTTCTCATCTCCACCGTGCTAATGACAGCCGGAGCAGCTCTGGTCAGCTTTGTCGCTTTACCTTCGAGATTCAAGCTCTATGATTTTGGCAACGACAAGGTCGTTAAGAACTGGCACCTTTTCTTCTGTGTTGTGACAGGATTATGGGCAGGACTTATCATTGGATATACAACTGAATATTACACTAGCAATGCTTACAGTCCAGTACAGGATGTGGCTGATTCTTGTAGAACAGGAGCTGCAACAAATGTAATATTCGGATTAGCTCTTGGATACAAATCCGTCATCATTCCCATATTTTCGATCGCTGTATCAATTTACGTGAGCTTCCGCTTGGCAGCCATGTACGGTATCGCAATGGCTGCTTTGGGAATGCTTAGCACCATTGCCACTGGTCTAGCCATTGATGCTTATGGACCTATAAGTGACAATGCAGGTGGAATAGCTGAAATGGCTGGAATGAGCCATGAGGTTCGTGAGAGAACGGATGCTTTAGATGCTGCAGGAAACACGACCGCAGCCATAGGAAAGGGCTTTGCCATTGGATCAGCAGCTCTTGTTTCCCTTGCATTGTTCGGCGCCTTTGTGAGCCGAGCAGGCATCGAAACCGTCAATGTTATGAACCCGAGAGTCTTCATTGGATTGATAGTAGGTGCAATGCTCCCATATTGGTTTTCAGCCATGACAATGAAGAGCGTTGGCAGCGCAGCGTTGAAGATGGTTGAGGAAGTTCGACGACAATTCAACTCGATCCCGGGGCTGATGGAAGGCAGGACAAAGCCAGACTATGCAAATTGTGTCAAGATATCGACCGACGCGTCGCTTCGAGAGATGATCCCTCCGGGTGCTTTGGTTTTGATTACACCACTCATTGCTGGAACATTCTTTGGAGTTGAGACTCTTGCTGGCCTTCTGGCTGGTTCCCTTGTCTCTGGCGTGCAGGTTGCTATCTCTGCTTCAAACACAGGTGGGGCTTGGGATAATGCAAAAAAGTACATTGAGGCGGGAGCAAGTGAACATGCTAAAGCCCTTGGTCCCAAAGGGTCAGAGGCTCACAAGGCAGCTGTAATAGGTGACACAGTCGGGGACCCTCTCAAGGACACTTCTGGTCCCTCACTTAATATTCTCATCAAGCTCATGGCTGTTGAGGCTTTGGTTTTTGCCCCATTCTTTGCAGCTCATGGTGGACTCATCTTCAAGCATATATAA 2280 46.45 MGGLSEGLIQLLIPAAALLGIGFAFLQWVLVSRVKVSGYADDESQENNLIETGHEEGFEDFEVVAKCAEIQKAISVGATSFLFTQYKYLVVFMGAFGAIIFLFLGSVKSFSTKSEPCTYNKGQMCKPALANAIFSTIAFFLGALTSVLSGFLGMKIATYANARTSLEARKGIGKAFTIAFRSGAVMGFLLAANGLLVLYASINLFKLYYGDDWEGLYESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKIEKNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESTCAALFVASISSFGFTHNYAAMSYPLLISSMGIVICLITTLFATDLVEVKKVSEIEPSLKRQLLISTVLMTAGAALVSFVALPSRFKLYDFGNDKVVKNWHLFFCVVTGLWAGLIIGYTTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFSIAVSIYVSFRLAAMYGIAMAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHEVRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGIETVNVMNPRVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNSIPGLMEGRTKPDYANCVKISTDASLREMIPPGALVLITPLIAGTFFGVETLAGLLAGSLVSGVQVAISASNTGGAWDNAKKYIEAGASEHAKALGPKGSEAHKAAVIGDTVGDPLKDTSGPSLNILIKLMAVEALVFAPFFAAHGGLIFKHI 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8211478 8219255 + CmaCh12G010350.1 Cma12g01035 305525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01035 759 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 8 757 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cma12g01035 759 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP-LIKE 8 757 - -
Cma12g01035 759 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 7 749 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cma12g01035 759 PIRSF H+-PPtase 16 757 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cma12g01035 759 Pfam Inorganic H+ pyrophosphatase 43 744 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cma12g01035 759 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 10 754 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00511 Cma-Chr10:2323176 Cma12g01035 Cma-Chr12:8211478 0 dispersed
Cma12g01035 Cma-Chr12:8211478 Cma17g00620 Cma-Chr17:5283051 3.40E-148 dispersed
Cma12g01035 Cma-Chr12:8211478 Cma11g00511 Cma-Chr11:2413130 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01035 K23025 - csv:101205277 1387.09