Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g01038 | ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACGTTTAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGCTGAGAGGGTTAAGTCTAAATTGAAAGGTCCACCAGTGCAAAGAAAACCACTGAAACATAGAGATTATGAGGTAGACCTCAATTCTCGATTGGGAAAAACCCAGGTTGTCACTCCAGTCGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCCGTTTGTGAATGCGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGAGCATCTCTTGAACAGGTACAGGAGCGATTTGAAGTTCTTAAAAAGAGAAAAACGCCCGGAAGCTTCACAGAGCAAGATCTCGAAGAGCGTATAATAAAACAGCAAGAAGAAGAAGAACAACGGAAGCGCGAGCGCCGAGAAAGGAAGAAAGAAAGGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTCGATCCCGACGTTGCAGCAATGATGGGGTTCGGGGGTTTCCGTTCATCCAAGAAGTGA | 609 | 45.98 | MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 8233810 | 8236904 | - | CmaCh12G010380.1 | Cma12g01038 | 305528 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g01038 | 202 | SMART | ZnF_U1_5 | 81 | 115 | IPR003604 | GO:0003676|GO:0008270 | |
| Cma12g01038 | 202 | MobiDBLite | consensus disorder prediction | 148 | 202 | - | - | |
| Cma12g01038 | 202 | Pfam | Zinc-finger of C2H2 type | 84 | 108 | - | - | |
| Cma12g01038 | 202 | MobiDBLite | consensus disorder prediction | 26 | 53 | - | - | |
| Cma12g01038 | 202 | Coils | Coil | 116 | 136 | - | - | |
| Cma12g01038 | 202 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 7 | 202 | IPR040107 | GO:0000398|GO:0005681 | |
| Cma12g01038 | 202 | SUPERFAMILY | beta-beta-alpha zinc fingers | 79 | 125 | IPR036236 | - | |
| Cma12g01038 | 202 | Coils | Coil | 22 | 42 | - | - | |
| Cma12g01038 | 202 | MobiDBLite | consensus disorder prediction | 148 | 183 | - | - | |
| Cma12g01038 | 202 | Coils | Coil | 144 | 181 | - | - | |
| Cma12g01038 | 202 | Gene3D | Classic Zinc Finger | 79 | 116 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma12g01038 | Cma-Chr12:8233810 | Cma05g01080 | Cma-Chr5:8535238 | 4.95E-16 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36036 | PF12171 | zf-C2H2_jaz | 1.80E-06 | CL0361 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g01038 | K12848 | - | csv:101206387 | 332.798 |