Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01045 ATGGCGTCGAGGAATCGGACTTTGGTTTTTAGGAAATACAGGGACGCGTTAAGGAGCGTGAGGGCTCCTACCAGCTCTTCGCCTGCTTGTCCATCGCCATCGACTAGTTCTAGCGCTGGTGGACCGGTAATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACCGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTCACTGTGGGTCTACCTCCGTCTTGGGTCGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGGAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACAGCTAATCGAGTCTCTAACGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAGGAGATTCTCTGTGGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAACGTTCAGCGATCCCTTGCCACTGACCTTCAGAACCTTTCCATGGAGCTTCGGAAGAAACAATCAACTTATTTGAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCAAAATGGAAATAGATCAAGAATGGAGGACGATGATTTAGAAGACATGGAATTCAATGAGCATCAGATGGCTAAGGTGCGAAAGAATGAAGCATTCACTGCCGAAAGAGAGCAGGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTACTTGTCATAGACCAGGGCACTATTATCGATAGAATAGATTACAATATTCAAAATGTTGCAACGACAGTTGACGAGGGCCTTAAGCAACTCGAGAAGGCGGAGAGAACGCAGAAAAAAGGCGGGATGGTAATGTGCGCAAGCGTTCTCATTATCATGTGCTTTGTCATGTTGGTCCTCTTGATCCTTAAAACCATACTATTTTGA 990 45.05 MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSSAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPSWVDVSEEIAANVQRARVKMVELAKAHGKALMPSFGDGKEDQQLIESLTQDITNLIKKSEKGLRRFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNQNGNRSRMEDDDLEDMEFNEHQMAKVRKNEAFTAEREQEIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLEKAERTQKKGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8277641 8282178 - CmaCh12G010450.1 Cma12g01045 305535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01045 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Cma12g01045 329 PANTHER SYNTAXIN-43-LIKE 1 324 - -
Cma12g01045 329 Pfam SNARE domain 269 321 IPR000727 -
Cma12g01045 329 MobiDBLite consensus disorder prediction 20 41 - -
Cma12g01045 329 SMART SynN_4 73 188 IPR006011 GO:0016020
Cma12g01045 329 Coils Coil 184 204 - -
Cma12g01045 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma12g01045 329 Gene3D - 79 287 - -
Cma12g01045 329 PANTHER SYNTAXIN 1 324 IPR045242 -
Cma12g01045 329 SMART tSNARE_6 228 295 IPR000727 -
Cma12g01045 329 CDD SNARE_syntaxin16 237 294 - -
Cma12g01045 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01087 Cma12g01045 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00638 Cma-Chr6:3134427 Cma12g01045 Cma-Chr12:8277641 7.37E-14 dispersed
Cma12g01045 Cma-Chr12:8277641 Cma16g01176 Cma-Chr16:9005154 1.51E-11 dispersed
Cma17g01060 Cma-Chr17:7591210 Cma12g01045 Cma-Chr12:8277641 1.48E-143 transposed
Cma12g01045 Cma-Chr12:8277641 Cma05g01087 Cma-Chr5:8576170 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01045 K08489 - csv:101207998 563.533