Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01045 | ATGGCGTCGAGGAATCGGACTTTGGTTTTTAGGAAATACAGGGACGCGTTAAGGAGCGTGAGGGCTCCTACCAGCTCTTCGCCTGCTTGTCCATCGCCATCGACTAGTTCTAGCGCTGGTGGACCGGTAATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACCGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTCACTGTGGGTCTACCTCCGTCTTGGGTCGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGGAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACAGCTAATCGAGTCTCTAACGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAGGAGATTCTCTGTGGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAACGTTCAGCGATCCCTTGCCACTGACCTTCAGAACCTTTCCATGGAGCTTCGGAAGAAACAATCAACTTATTTGAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCAAAATGGAAATAGATCAAGAATGGAGGACGATGATTTAGAAGACATGGAATTCAATGAGCATCAGATGGCTAAGGTGCGAAAGAATGAAGCATTCACTGCCGAAAGAGAGCAGGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTACTTGTCATAGACCAGGGCACTATTATCGATAGAATAGATTACAATATTCAAAATGTTGCAACGACAGTTGACGAGGGCCTTAAGCAACTCGAGAAGGCGGAGAGAACGCAGAAAAAAGGCGGGATGGTAATGTGCGCAAGCGTTCTCATTATCATGTGCTTTGTCATGTTGGTCCTCTTGATCCTTAAAACCATACTATTTTGA | 990 | 45.05 | MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSSAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPSWVDVSEEIAANVQRARVKMVELAKAHGKALMPSFGDGKEDQQLIESLTQDITNLIKKSEKGLRRFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNQNGNRSRMEDDDLEDMEFNEHQMAKVRKNEAFTAEREQEIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLEKAERTQKKGGMVMCASVLIIMCFVMLVLLILKTILF | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8277641 | 8282178 | - | CmaCh12G010450.1 | Cma12g01045 | 305535 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01045 | 329 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 233 | 295 | IPR000727 | - | |
Cma12g01045 | 329 | PANTHER | SYNTAXIN-43-LIKE | 1 | 324 | - | - | |
Cma12g01045 | 329 | Pfam | SNARE domain | 269 | 321 | IPR000727 | - | |
Cma12g01045 | 329 | MobiDBLite | consensus disorder prediction | 20 | 41 | - | - | |
Cma12g01045 | 329 | SMART | SynN_4 | 73 | 188 | IPR006011 | GO:0016020 | |
Cma12g01045 | 329 | Coils | Coil | 184 | 204 | - | - | |
Cma12g01045 | 329 | ProSitePatterns | Syntaxin / epimorphin family signature. | 239 | 278 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cma12g01045 | 329 | Gene3D | - | 79 | 287 | - | - | |
Cma12g01045 | 329 | PANTHER | SYNTAXIN | 1 | 324 | IPR045242 | - | |
Cma12g01045 | 329 | SMART | tSNARE_6 | 228 | 295 | IPR000727 | - | |
Cma12g01045 | 329 | CDD | SNARE_syntaxin16 | 237 | 294 | - | - | |
Cma12g01045 | 329 | SUPERFAMILY | t-snare proteins | 78 | 288 | IPR010989 | GO:0016020|GO:0016192 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01087 | Cma12g01045 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00638 | Cma-Chr6:3134427 | Cma12g01045 | Cma-Chr12:8277641 | 7.37E-14 | dispersed | |
Cma12g01045 | Cma-Chr12:8277641 | Cma16g01176 | Cma-Chr16:9005154 | 1.51E-11 | dispersed | |
Cma17g01060 | Cma-Chr17:7591210 | Cma12g01045 | Cma-Chr12:8277641 | 1.48E-143 | transposed | |
Cma12g01045 | Cma-Chr12:8277641 | Cma05g01087 | Cma-Chr5:8576170 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01045 | K08489 | - | csv:101207998 | 563.533 |