Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01048 ATGGGGCATTTCTCCACCATGTTCAATGGTTTAGCAAGGTCATTTTCTTTCAAAAAAGGTAGAAATGCCGGGAGTTTAGCCAACGAGGGAGGTCGAGAAGCTGCGAAAGCCATGGTAAAGGAAGCGAAAAAGAAAGACTCTATATTATGCAATTCTGGCTTCCTCAATGCAGAAGGCTCGGAGAGCTTTGCTTCGGTGTTCTCGAAACGAGGCAACAAAGGAGTAAACCAAGATTGCTGCATCGTATGGGAGGAATTTGGATGCCAAGACGACATGTTATTTTGTGGAGTTTTCGACGGGCACGGACCGTGGGGTCATTTTGTCGCGAAAACAGTAAGAGAATCGATGCTACCATCTTTGCTGCACCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGAACCAGAATTGGATTCGGAAAAGAAGCATCAACGATTCGAGTTATGGAAGCATTCGTTTTTAAGAACTTGTGCTGCTATCGATCATGAGCTCGAGCAGCATCGAAAAATCGATACGGTTTACAGTGGAACAACTGCCCTGTCCATAGTTAAACAGGGTGAACTAGTCGTTTTAGCCAACGTTGGCGACTCTCGAGCGGTTTTGGCTACTACTTCAGATGACGGAAGTGTAGTTCCGGTTCAGCTCACTGTCGATTTCAAACCAAACCTACCTCAGGAGGCCGAGCGGATTCGACAGTGCAACGGGAGGGTGTTTTGTTTAAGTGATGAGCCTGGAGTTCATCGAGTCTGGCTTCCCGATGAGGAATCGCCTGGATTGGCGATGTCGAGAGCATTCGGTGATTATTGTATTAAAGAATTTGGGCTCATTTCTGTGCCAGAAGTGACATGTAGAAGCATAACTAGAAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTTTCTAACCAAGAAGCAGTCGAGATTGTATCGTCGACATTGGATCGAGCAAAATCATCGAAACGTTTGGTTGAGTGTGCGGTTCGGGCATGGAAACGGAAGAGACGGGGCATTGCGATGGATGATATATCAGCTATCTGCCTCTTCTTCCACTCCTCATCAGATCAAGATCACCTTGTATCCTAG 1095 46.12 MGHFSTMFNGLARSFSFKKGRNAGSLANEGGREAAKAMVKEAKKKDSILCNSGFLNAEGSESFASVFSKRGNKGVNQDCCIVWEEFGCQDDMLFCGVFDGHGPWGHFVAKTVRESMLPSLLHHWQQGLAQAFLEPELDSEKKHQRFELWKHSFLRTCAAIDHELEQHRKIDTVYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVPVQLTVDFKPNLPQEAERIRQCNGRVFCLSDEPGVHRVWLPDEESPGLAMSRAFGDYCIKEFGLISVPEVTCRSITRRDQFIILATDGVWDVVSNQEAVEIVSSTLDRAKSSKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSDQDHLVS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8302692 8304397 - CmaCh12G010480.1 Cma12g01048 305538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01048 364 SUPERFAMILY PP2C-like 62 354 IPR036457 -
Cma12g01048 364 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 361 - -
Cma12g01048 364 Gene3D - 51 356 IPR036457 -
Cma12g01048 364 CDD PP2Cc 63 353 IPR001932 -
Cma12g01048 364 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Cma12g01048 364 PANTHER ALPHABET, ISOFORM E-RELATED 1 361 - -
Cma12g01048 364 SMART PP2C_4 53 351 IPR001932 -
Cma12g01048 364 Pfam Protein phosphatase 2C 79 327 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01149 Cma-Chr10:8131534 Cma12g01048 Cma-Chr12:8302692 2.88E-165 dispersed
Cma12g01048 Cma-Chr12:8302692 Cma17g00347 Cma-Chr17:1887173 2.22E-150 dispersed
Cma12g01048 Cma-Chr12:8302692 Cma05g01091 Cma-Chr5:8604749 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01048 - - csv:101208725 664.455