Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01073 | ATGCAAGATATCTTTGCTTCTGTTCGCCGATCATTGGTGTTTCGTGCTCCTGTTGAGAATGAGGATTCGCATTCCCCGGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGTATTAGGAAGTCCAGAGTGTTTTCTAGGCACTCGCCATCGTCGTCGGCTTATCCTCCGATTCTCAAGGAAACTGAGCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGTCGGGTGTATATGGGCATGAATCTTGGCTCTGGCGAGCTTCTCGCTGTTAAACAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATATTTGGGCACGGTTAGGGAGGATGATTCTGTAAATATATTATTGGAATTTGTCCCTGGTGGATCAATATCATCACTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTATAAGAACATATACCAAACAGTTATTACTGGGACTGGAATACTTGCACAAGAATGGTATCATGCACAGGGACATTAAGGGGGCGAATATTCTTGTAGATAACAAGGGATGCATTAAGCTTGCTGATTTTGGTGCATCGAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTTTGCAGACTGGGCATAGTTTCTCTGCGGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGTTCTTTTTCATATTGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCAGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCCAACTTAAGACTAGCTGCATCTGAACTCCTGAAGCATCCGTTTGTTACTGGGGAGGACCCAGAATCTCTACTTGTATCACGTGATGCATGCACGGAGCCCTTGGAAACCCATTCACTTTTATATACTCCAAACCTTGAAATGAGCAAAACTCCAACGCATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAAAACTATACACTGCAAACAAACTAGAAAATGATACGTGGGGAACAAACAACAGTGATAATGAAATGTGTCAGATTGATGGCAATGATGATTTTATGTTAGATGAAGTAAAACTCAGGTCTTCTATGATATCTGGGAATTTCAAGAGTTATAACCCAATCTGTGAGCCGTCGGATGATGAGGACTGCAAATTTGATCAAAGTTCAGTAGTAAAGCAAGGAAGCGATTTAGATGAGCAAATTCTTGCACCTGGCAGCTATTCTGGAGTTTTTGATGATGACCAAAACTTCTCATTTCCTAGTGGACGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCATTCTTGGATAAGAAGGCTCTTGAATTGAAGAAACTGCAGTCACCACTATATGAGGAGTTTTACAATAGTTTGAATGGATCCTGCTCTCCAGTTTTTGTAGAGAGTAAACAAGATGAAACTACTCCTAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCCGGTCATCTATCCCCAGCATTCGATGCCTTCGGCACTGGGACTCCAGGGAGTGATAGCAGCAGCAGGGGTAACGCAAATGATCAGAGGTCACAACTCAATGATTGGAAAGGACTTCTAGTTGATGGTCAGCCCGAAGCTGGTAGTCCGAGTAAACACTACTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGAGGAAACGAGAGATGATGCGTCAAGCTGGCACGGGAGGCAAAACATCATCTCCAAAGGATAAAGCCATCGGCAGGCCGAGAGAGCGAACACGATTTGCATCTCCATTCCGGGACGACGCGTCGGGTGCAGGGAGGGAAAACAGGAAAAATTCATCTCCCGAGGAAGTGAGGAAAGATTAG | 2070 | 44.11 | MQDIFASVRRSLVFRAPVENEDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSAYPPILKETEPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREDDSVNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAVLFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRLAASELLKHPFVTGEDPESLLVSRDACTEPLETHSLLYTPNLEMSKTPTHPGSSDICNLDSLSCSKLYTANKLENDTWGTNNSDNEMCQIDGNDDFMLDEVKLRSSMISGNFKSYNPICEPSDDEDCKFDQSSVVKQGSDLDEQILAPGSYSGVFDDDQNFSFPSGRSLSEDEDELTESKIKAFLDKKALELKKLQSPLYEEFYNSLNGSCSPVFVESKQDETTPKYLKLPPKSRSPSRSPGHLSPAFDAFGTGTPGSDSSSRGNANDQRSQLNDWKGLLVDGQPEAGSPSKHYSEIQRKWKEELDQELERKREMMRQAGTGGKTSSPKDKAIGRPRERTRFASPFRDDASGAGRENRKNSSPEEVRKD | 689 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8486090 | 8491604 | - | CmaCh12G010730.1 | Cma12g01073 | 305563 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01073 | 689 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 194 | 206 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g01073 | 689 | Pfam | Protein kinase domain | 71 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01073 | 689 | MobiDBLite | consensus disorder prediction | 541 | 689 | - | - | |
Cma12g01073 | 689 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524 | |
Cma12g01073 | 689 | Coils | Coil | 103 | 130 | - | - | |
Cma12g01073 | 689 | MobiDBLite | consensus disorder prediction | 650 | 689 | - | - | |
Cma12g01073 | 689 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 371 | IPR011009 | - | |
Cma12g01073 | 689 | Gene3D | Transferase(Phosphotransferase) domain 1 | 69 | 357 | - | - | |
Cma12g01073 | 689 | ProSiteProfiles | Protein kinase domain profile. | 70 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01073 | 689 | MobiDBLite | consensus disorder prediction | 574 | 594 | - | - | |
Cma12g01073 | 689 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 46 | 569 | - | - | |
Cma12g01073 | 689 | Coils | Coil | 618 | 638 | - | - | |
Cma12g01073 | 689 | SMART | serkin_6 | 70 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01073 | 689 | PANTHER | ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3, PUTATIVE-RELATED | 46 | 569 | - | - | |
Cma12g01073 | 689 | MobiDBLite | consensus disorder prediction | 613 | 638 | - | - | |
Cma12g01073 | 689 | CDD | STKc_MAPKKK | 69 | 332 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00381 | Cma-Chr7:1632830 | Cma12g01073 | Cma-Chr12:8486090 | 4.57E-20 | dispersed | |
Cma12g01073 | Cma-Chr12:8486090 | Cma07g00805 | Cma-Chr7:3686636 | 9.70E-88 | dispersed | |
Cma17g00258 | Cma-Chr17:1332965 | Cma12g01073 | Cma-Chr12:8486090 | 0 | transposed | |
Cma12g01073 | Cma-Chr12:8486090 | Cma05g01139 | Cma-Chr5:8891905 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68970 | PF00069 | Pkinase | 2.60E-71 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01073 | K20606 | - | csv:101209358 | 1145.95 |