Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01073 ATGCAAGATATCTTTGCTTCTGTTCGCCGATCATTGGTGTTTCGTGCTCCTGTTGAGAATGAGGATTCGCATTCCCCGGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGTATTAGGAAGTCCAGAGTGTTTTCTAGGCACTCGCCATCGTCGTCGGCTTATCCTCCGATTCTCAAGGAAACTGAGCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGTCGGGTGTATATGGGCATGAATCTTGGCTCTGGCGAGCTTCTCGCTGTTAAACAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATATTTGGGCACGGTTAGGGAGGATGATTCTGTAAATATATTATTGGAATTTGTCCCTGGTGGATCAATATCATCACTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTATAAGAACATATACCAAACAGTTATTACTGGGACTGGAATACTTGCACAAGAATGGTATCATGCACAGGGACATTAAGGGGGCGAATATTCTTGTAGATAACAAGGGATGCATTAAGCTTGCTGATTTTGGTGCATCGAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTTTGCAGACTGGGCATAGTTTCTCTGCGGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGTTCTTTTTCATATTGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCAGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCCAACTTAAGACTAGCTGCATCTGAACTCCTGAAGCATCCGTTTGTTACTGGGGAGGACCCAGAATCTCTACTTGTATCACGTGATGCATGCACGGAGCCCTTGGAAACCCATTCACTTTTATATACTCCAAACCTTGAAATGAGCAAAACTCCAACGCATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAAAACTATACACTGCAAACAAACTAGAAAATGATACGTGGGGAACAAACAACAGTGATAATGAAATGTGTCAGATTGATGGCAATGATGATTTTATGTTAGATGAAGTAAAACTCAGGTCTTCTATGATATCTGGGAATTTCAAGAGTTATAACCCAATCTGTGAGCCGTCGGATGATGAGGACTGCAAATTTGATCAAAGTTCAGTAGTAAAGCAAGGAAGCGATTTAGATGAGCAAATTCTTGCACCTGGCAGCTATTCTGGAGTTTTTGATGATGACCAAAACTTCTCATTTCCTAGTGGACGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCATTCTTGGATAAGAAGGCTCTTGAATTGAAGAAACTGCAGTCACCACTATATGAGGAGTTTTACAATAGTTTGAATGGATCCTGCTCTCCAGTTTTTGTAGAGAGTAAACAAGATGAAACTACTCCTAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCCGGTCATCTATCCCCAGCATTCGATGCCTTCGGCACTGGGACTCCAGGGAGTGATAGCAGCAGCAGGGGTAACGCAAATGATCAGAGGTCACAACTCAATGATTGGAAAGGACTTCTAGTTGATGGTCAGCCCGAAGCTGGTAGTCCGAGTAAACACTACTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGAGGAAACGAGAGATGATGCGTCAAGCTGGCACGGGAGGCAAAACATCATCTCCAAAGGATAAAGCCATCGGCAGGCCGAGAGAGCGAACACGATTTGCATCTCCATTCCGGGACGACGCGTCGGGTGCAGGGAGGGAAAACAGGAAAAATTCATCTCCCGAGGAAGTGAGGAAAGATTAG 2070 44.11 MQDIFASVRRSLVFRAPVENEDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSAYPPILKETEPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREDDSVNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAVLFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRLAASELLKHPFVTGEDPESLLVSRDACTEPLETHSLLYTPNLEMSKTPTHPGSSDICNLDSLSCSKLYTANKLENDTWGTNNSDNEMCQIDGNDDFMLDEVKLRSSMISGNFKSYNPICEPSDDEDCKFDQSSVVKQGSDLDEQILAPGSYSGVFDDDQNFSFPSGRSLSEDEDELTESKIKAFLDKKALELKKLQSPLYEEFYNSLNGSCSPVFVESKQDETTPKYLKLPPKSRSPSRSPGHLSPAFDAFGTGTPGSDSSSRGNANDQRSQLNDWKGLLVDGQPEAGSPSKHYSEIQRKWKEELDQELERKREMMRQAGTGGKTSSPKDKAIGRPRERTRFASPFRDDASGAGRENRKNSSPEEVRKD 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8486090 8491604 - CmaCh12G010730.1 Cma12g01073 305563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01073 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cma12g01073 689 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01073 689 MobiDBLite consensus disorder prediction 541 689 - -
Cma12g01073 689 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Cma12g01073 689 Coils Coil 103 130 - -
Cma12g01073 689 MobiDBLite consensus disorder prediction 650 689 - -
Cma12g01073 689 SUPERFAMILY Protein kinase-like (PK-like) 69 371 IPR011009 -
Cma12g01073 689 Gene3D Transferase(Phosphotransferase) domain 1 69 357 - -
Cma12g01073 689 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01073 689 MobiDBLite consensus disorder prediction 574 594 - -
Cma12g01073 689 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 46 569 - -
Cma12g01073 689 Coils Coil 618 638 - -
Cma12g01073 689 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01073 689 PANTHER ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3, PUTATIVE-RELATED 46 569 - -
Cma12g01073 689 MobiDBLite consensus disorder prediction 613 638 - -
Cma12g01073 689 CDD STKc_MAPKKK 69 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00381 Cma-Chr7:1632830 Cma12g01073 Cma-Chr12:8486090 4.57E-20 dispersed
Cma12g01073 Cma-Chr12:8486090 Cma07g00805 Cma-Chr7:3686636 9.70E-88 dispersed
Cma17g00258 Cma-Chr17:1332965 Cma12g01073 Cma-Chr12:8486090 0 transposed
Cma12g01073 Cma-Chr12:8486090 Cma05g01139 Cma-Chr5:8891905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68970 PF00069 Pkinase 2.60E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01073 K20606 - csv:101209358 1145.95