Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01085 ATGGCATTAGAAGCTGTTGTTTTCTCTCAAGATCTTTACTCCTTGTTTGCTGGAGGCCTCAGCTTTGAATATCCTCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATCCGCCATTGGAGCTCGAATCAAGAACACCAAACCCAGTTAAGCCAAGAAAACGACGACCCAAATCCCGCAAGAACAAACAAGAAATCGAGAATCAAAGAATGACCCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTAATGCCAGATTCATATATTCAAAGAGGAGATCAAGCTTCAATCGTTGGTGGAGCTATAAATTTCGTTAAGGAATTAGAACAACAAGTTCAGTTTCTCTCAACAGATTCAAGTTCTTGTTCTTCTTGTTCTTCTTCTTGTTCTTCATCTTCTCAAACTCAGAGCTCCTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGATCAAAAAAACGACCAAAACAGGTCTTGAAAATTGTAGCTGGATTGCAAGCTCTGTTCCTCTCTGTTCTTCATCTCAATATCTCAACGATGAACCAAGTTGTTCATTACTGTCTCAGTGTTAAGGTTGAAGACGACTGCAAGCTGAGCTCTGTTGATGAAATTGCTTGTGCTCTACATCAGTTGCTTAGTAGAATCGAAGTGGAATCTGTTATGAACTGA 726 38.84 MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESRTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEVESVMN 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8570585 8573000 + CmaCh12G010850.1 Cma12g01085 305575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01085 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 134 IPR036638 GO:0046983
Cma12g01085 241 Pfam Helix-loop-helix DNA-binding domain 70 121 IPR011598 GO:0046983
Cma12g01085 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
Cma12g01085 241 SMART finulus 75 126 IPR011598 GO:0046983
Cma12g01085 241 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 33 131 - -
Cma12g01085 241 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 135 241 - -
Cma12g01085 241 MobiDBLite consensus disorder prediction 28 68 - -
Cma12g01085 241 Gene3D - 54 135 IPR036638 GO:0046983
Cma12g01085 241 PANTHER MAX DIMERIZATION, MAD 135 241 - -
Cma12g01085 241 PANTHER MAX DIMERIZATION, MAD 33 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00225 Cma-Chr12:1104808 Cma12g01085 Cma-Chr12:8570585 4.77E-77 dispersed
Cma12g01085 Cma-Chr12:8570585 Cma19g00230 Cma-Chr19:1582171 7.69E-63 dispersed
Cma04g00844 Cma-Chr4:4341379 Cma12g01085 Cma-Chr12:8570585 8.06E-60 transposed
Cma12g01085 Cma-Chr12:8570585 Cma05g01154 Cma-Chr5:8975120 2.65E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36038 PF00010 HLH 3.00E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01085 - - cpep:111798037 360.533