Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01085 | ATGGCATTAGAAGCTGTTGTTTTCTCTCAAGATCTTTACTCCTTGTTTGCTGGAGGCCTCAGCTTTGAATATCCTCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATCCGCCATTGGAGCTCGAATCAAGAACACCAAACCCAGTTAAGCCAAGAAAACGACGACCCAAATCCCGCAAGAACAAACAAGAAATCGAGAATCAAAGAATGACCCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTAATGCCAGATTCATATATTCAAAGAGGAGATCAAGCTTCAATCGTTGGTGGAGCTATAAATTTCGTTAAGGAATTAGAACAACAAGTTCAGTTTCTCTCAACAGATTCAAGTTCTTGTTCTTCTTGTTCTTCTTCTTGTTCTTCATCTTCTCAAACTCAGAGCTCCTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGATCAAAAAAACGACCAAAACAGGTCTTGAAAATTGTAGCTGGATTGCAAGCTCTGTTCCTCTCTGTTCTTCATCTCAATATCTCAACGATGAACCAAGTTGTTCATTACTGTCTCAGTGTTAAGGTTGAAGACGACTGCAAGCTGAGCTCTGTTGATGAAATTGCTTGTGCTCTACATCAGTTGCTTAGTAGAATCGAAGTGGAATCTGTTATGAACTGA | 726 | 38.84 | MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESRTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEVESVMN | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8570585 | 8573000 | + | CmaCh12G010850.1 | Cma12g01085 | 305575 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01085 | 241 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 69 | 134 | IPR036638 | GO:0046983 | |
Cma12g01085 | 241 | Pfam | Helix-loop-helix DNA-binding domain | 70 | 121 | IPR011598 | GO:0046983 | |
Cma12g01085 | 241 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 69 | 120 | IPR011598 | GO:0046983 | |
Cma12g01085 | 241 | SMART | finulus | 75 | 126 | IPR011598 | GO:0046983 | |
Cma12g01085 | 241 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 33 | 131 | - | - | |
Cma12g01085 | 241 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 135 | 241 | - | - | |
Cma12g01085 | 241 | MobiDBLite | consensus disorder prediction | 28 | 68 | - | - | |
Cma12g01085 | 241 | Gene3D | - | 54 | 135 | IPR036638 | GO:0046983 | |
Cma12g01085 | 241 | PANTHER | MAX DIMERIZATION, MAD | 135 | 241 | - | - | |
Cma12g01085 | 241 | PANTHER | MAX DIMERIZATION, MAD | 33 | 131 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00225 | Cma-Chr12:1104808 | Cma12g01085 | Cma-Chr12:8570585 | 4.77E-77 | dispersed | |
Cma12g01085 | Cma-Chr12:8570585 | Cma19g00230 | Cma-Chr19:1582171 | 7.69E-63 | dispersed | |
Cma04g00844 | Cma-Chr4:4341379 | Cma12g01085 | Cma-Chr12:8570585 | 8.06E-60 | transposed | |
Cma12g01085 | Cma-Chr12:8570585 | Cma05g01154 | Cma-Chr5:8975120 | 2.65E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36038 | PF00010 | HLH | 3.00E-10 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01085 | - | - | cpep:111798037 | 360.533 |