Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01093 ATGTTGAGATTCCATGTGGGCGGGAAGGTGGTCGAGAGAGTTGACTTGTTGAGGAAGAAACACTGGACATGGCGGTTGGATCTGTGGCCATTCGCCATTCTTTATGCGGCCTGGCTTGCTGTCGTTGTTCCTAGTATTGACTTTGGGGATGCTCTCATTGTTTTGGGTGGACTTGTGGCTCTTCATGTTCTGGTCTTGCTTTTCACTGGTTGGTCGGTTGATTTCAAATGTTTTGTCCAGTACAGCAAGGTTAATGATATTTATCATGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCGGGCTCAAAAGAGATTGTTTCTCTTCATTTTCGTAAGCTTCTGGCTGGTTCTGAATCTGCAATGGATATTGAGGAGATCTACTTTGATTTCAGAAAACAAAGATTTATTTATTCAAAGGAAAAGGAGACTTTCTGCAAGCTTCCTTACCCAACAAAAGAAACTTTTGGTTATTATCTAAAGAGTACTGGCTATGGCTCCGAGCCTAAAGTTGTAGCCGCCGTTGATAAATGGGGACGCAATATATTTGAGTATCCACAACCTACGTTCCAGAAGTTAATGAAAGAGCAGTGTATGGAACCATTTTTTGTTTTTCAGGTTTTTTGTGTGGGACTATGGTGTTTGGATGAGTATTGGTATTACAGCCTGTTTACACTGTTTATGCTTTTCATGTTTGAATCAACAATGGCAAAAAGTCGGTTAAAGACCTTAAGTGAGTTAAGACGTGTTAGAGTGGATACTCAGACCTTAATGGTGCATCGGTGTGGAAAGTGGGTGAAGCTACCTGGAACTGAGCTTTTGCCTGGTGATGTTGTCTCCATTGGGCGTAATTCTGGTCAGAGTGGTGAAGATAAATCTGTACCTGCTGATATGCTTATATTGGCTGGAAGTGCTATTGTTAATGAAGCCATTCTTACTGGGGAGTCTACACCACAATGGAAGGTTTCAGTATCTGGGAGAGGAATTGAGGAGAAGTTATCGGCTAAGAGAGACAAAAGTCACATGTTATTTGGTGGAACCAAAATATTGCAGCATACACCAGATAAGACCTTTCCCCTTAGGACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGAGAACTGGATTTGAAACAAGTCAAGGGAAACTGATGCGGACAATTTTGTTTTCTACAGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCTTATTTATTTTGTTCTTGGTTGTATTTGCGGTTATAGCTGCTGGTTACGTTCTTGTAAAGGGGTTGGAAGATCCCACGAGAAGCAAGTACAAGCTTTTCCTTAGTTGCTCACTTATAATCACTTCTGTTATTCCTCCTGAACTACCTATGGAACTGTCAATAGCCGTTAATACATCGTTAATTGCTCTGGCACGTTGTGGAATATTTTGTACAGAGCCTTTCAGAATACCATTTGCTGGAAAGGTTGATATTTGTTGTTTTGATAAAACTGGAACGTTGACATCAGATGACATGGAGTTTCAAGGTGTAGTTGGATTGAGTGATAAGGAGGATTTGGAAACTGACATGACTAGTGTGCCTTTGCGCACAGTTGAAATTCTGGCTTCTTGCCATGCATTGGTGTTTGTGGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCACTGAAGGGAGTTGATTGGACTTACAAATCTGATGAGAAAGCCATTCCAAGAAAGGGAAGTGGCCACGCTGTTCAGATTGTTCAGAGGCACCACTTTGCTTCACACTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCTCCTGAAACAATACAAGAGAGGCTCACTGATATACCTTCATTTTATGTCGAGACGTACAAGAAATATACACGACAAGGTTCCCGTGTTCTTGCTCTTGCTTACAAATCACTTCCAGACATGATGGTTAGTGAAGCTAGAGGCCTGGATAGGGACTTGGTGGAGAGTGACCTTATATTTGCTGGTTTTGCGGTGTTCAATTGTCCAATTAGAGCGGATTCGGCTACAGTCTTATCTGAGCTTAAAGGATCATCCCATGACTTGGTAATGATTACTGGCGACCAAGCTTTAACGGCATGCCACGTAGCTAGCCAAGTTCATATTACCTCAAAGCAGATTTTAATTCTCAATTCGAAGAAGGGAACTGAGGAATATGAATGGCTCTCCCCAGATGAGTTACAGACAGTTCCCTACAGTGAGAAAGAGGTGGGGAATTTATCGGAGACATACGATCTGTGTATTGGTGGTGACTGCATTGGAATGCTGCAAAGCACCTCCACTGTGCTCGATGTTATTCCATACGTTAAGGTTTTCGCTAGAGTTGCTCCAGAGCAGAAAGAACTCATATTGACCACTTTCAAAACAGTTGGAAGAATGACATTGATGTGCGGGGATGGAACAAATGATGTTGGAGCTTTGAAGCAGGCTCATGTAGGAATTGCTCTTCTAAACGCAGTCCCCCCTCCTAAAACTGGGAACTCTCCTTCAGAAGCATCAAAAGACGACTCGGGACGGTCTGCAAAGTCGAAGAAATCTAAGCCTTCATCCGAATCATCAGGAAAAGCACTTACAAGTGGAGAAGGTTCTTCAAAAAGCAAAGTTAGTTCGAAACTGGATTCCGTTGCTGAGCAAGCGAGTAATCGTTCAAGGACACCTGCAGAGATGCAAAGACAAAAGCTAAAGAAACTGATGGATGAGTTAAATGAAGAGGGTGATGGGCGCTCGGCCCCTATTGTCAAGCTTGGGGATGCATCCATGGCATCGCCGTTCACAGCAAAGCATGCTTCTGTTGCTCCGACCACCGACATTATTCGCCAAGGTCGAAGTACTCTAGTGACAACTCTCCAGATGTTTAAAATACTCGGTCTCAACTGCCTCGCTACAGCCTATGTATTGAGTGTTATGTATTTGGATGGTGTAAAGCTTGGCGACATTCAAGCGACAATCAGTGGAGTATTCACAGCAGCCTTTTTCCTCTTCATCTCACATGCACGCCCCCTTCCAACACTTTCAGCTGAACGGCCCCATCCACATATCTTCTGCTCTTATGTTCTCCTTTCCCTGCTAGGCCAATTTGCAATCCACCTCTTTTTCTTGATTTCTTCAGTTAACGAAGCCGAAAAGCACATGCCCGACGAATGCATCGAGCCAGACTCAGATTTTCATCCCAACTTGGTTAACACTGTTTCGTACATGGTAAGCATGATGCTTCAGGTAGCTACCTTTGCTGTAAACTACATGGGTCATCCCTTCAACCAGAGTGTATCCGAAAACAAACCGTTCTTATACGCCCTCTTGGCTGCGGTTGGTTTCTTCACCGTTATTACCTCAGATTTGTTCCGAGACCTGAATGACTGGCTGAAACTTGTTCCATTGCCTGCGGGATTGAGAGACAAGCTTCTGTTATGGGCACTTCTTATGTTCGTGTGCTGTTACTCTTGGGAAAGACTGTTGAGATGGATGTTCCCTGGAAAAATCCCTGCATGGCGTAAGCGACAACGAGTGGTAGCTGCGAATCTGGAGAAGAAGAAACAGATCATGAAGCATGATTCAAATATGGAGGCAGAGTCAACTCTGCCTGAATGCGAAGAGAAGGACGTAGGTAGTCCTGATGAACAGACGGACGAGGGAAATGTAGAAAATTTCTCAACAGAACATGAAGGTAAGAGAAAAGAAGCTCCTACAGAACAAGTAGATGACATGAAAGAAGATGCGACTGAATTCGGTAACACGTCTGAAGCTGGAAAGTCTAATGAAAAGTGCATTGCAAAAGGGTCGCGTAAAAAGAAAACTATAAAAGTTTTGAAGGTAAAGCAAAAAATTGTAAAGAAATCCCCTGCTAGCAATGCATTGAGGACCAAAAAGGCACAGGTTGAACAGGAAGATAACAAAAAGGAAAAAGAGGTTCATGTAGCCCAAGAAGTGGGAGAAACTCCTGAAGCTCAGAATTCCAAAAAGGATGAAGAGGTTTCTGTCGACCAAGAAGCGGGAGAAACTCTTGAAGCTCCGATTTCCAACAAGGACGAAGAGGTTTCAGTAGACCAAGCGGTGGGAGAAACTCTTGAAGCTCAGAATCCCACTGAAAATTCCAGCAAACCAGAGTCAAAGACGAAGAAGATTACTAAAGCTTTGAAGGTGAAAAGAAAAATCGTAAAGAAATCTCCAGCGAGCAGCCAAATGAAGACTAATAAAAATGGGAAAGGTAATGAAAAGAATGTAGAAGATACCAAAAATGGGAAAGGTAATGAAAAGAATGTAGAAGATACCGTGAAGCCTGACAAAAAGGCAAATGCTAATGAAAGTATCTCAAAAGCGGAGCATATCGAGAAGGGTGAAGAGACATCTGTTAGCGATAGAAACAATTCCGAGTTCAAAAATAGCATCAAGGAACAGAACAATATTGAGAAGGTTGGCTCTTCAGATAAGAGATTAAAGAATCATAAAAGGAAAGAAAAGGATAGAGCTCAAATGAGTCGAATAGAAGATAAGAACGAAGAAAATCTCGGCGGATTGATTTTCATGTGCAGTGCGAAAACGAAGCCAGATTGTTTTCACTACAACATAATGGGTGTTTCTGCTGGCAGAAAGGATACCGTCTTAGCAATCAAACCCGGGCTAAACCTATTCCTTTATGATTTTGATCTCAGGCTTCTGTATGGGATCTATAAGGCATCTTCTTCGGGTGGCATGAAACTCGAGCCAAAGGCTTTTAATGGAGCTTTCCCTGCTCAGGTGCGGTTCAATGTTTACAAGGATTGTTTTCCACTAGCTGAGAGCATTTTCAAGAATGCCATCCAAGAGAACTATTTTGAGAAGCACAAGTTCAAAGTTGAACTCTCTGTTAAACAGGTGGATGTGTCAGGTTCAGAAGCTCTCAGCACTTTTCCGTCCACTAGGACTCCTCTCGAGATCGGCTACTATTGGGTTCCTTCCAAAGGTGCCAATTAG 4986 42.94 MLRFHVGGKVVERVDLLRKKHWTWRLDLWPFAILYAAWLAVVVPSIDFGDALIVLGGLVALHVLVLLFTGWSVDFKCFVQYSKVNDIYHADTCKIVPAKFSGSKEIVSLHFRKLLAGSESAMDIEEIYFDFRKQRFIYSKEKETFCKLPYPTKETFGYYLKSTGYGSEPKVVAAVDKWGRNIFEYPQPTFQKLMKEQCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTLMVHRCGKWVKLPGTELLPGDVVSIGRNSGQSGEDKSVPADMLILAGSAIVNEAILTGESTPQWKVSVSGRGIEEKLSAKRDKSHMLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARCGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFQGVVGLSDKEDLETDMTSVPLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWTYKSDEKAIPRKGSGHAVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDIPSFYVETYKKYTRQGSRVLALAYKSLPDMMVSEARGLDRDLVESDLIFAGFAVFNCPIRADSATVLSELKGSSHDLVMITGDQALTACHVASQVHITSKQILILNSKKGTEEYEWLSPDELQTVPYSEKEVGNLSETYDLCIGGDCIGMLQSTSTVLDVIPYVKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPKTGNSPSEASKDDSGRSAKSKKSKPSSESSGKALTSGEGSSKSKVSSKLDSVAEQASNRSRTPAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHIFCSYVLLSLLGQFAIHLFFLISSVNEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPAGLRDKLLLWALLMFVCCYSWERLLRWMFPGKIPAWRKRQRVVAANLEKKKQIMKHDSNMEAESTLPECEEKDVGSPDEQTDEGNVENFSTEHEGKRKEAPTEQVDDMKEDATEFGNTSEAGKSNEKCIAKGSRKKKTIKVLKVKQKIVKKSPASNALRTKKAQVEQEDNKKEKEVHVAQEVGETPEAQNSKKDEEVSVDQEAGETLEAPISNKDEEVSVDQAVGETLEAQNPTENSSKPESKTKKITKALKVKRKIVKKSPASSQMKTNKNGKGNEKNVEDTKNGKGNEKNVEDTVKPDKKANANESISKAEHIEKGEETSVSDRNNSEFKNSIKEQNNIEKVGSSDKRLKNHKRKEKDRAQMSRIEDKNEENLGGLIFMCSAKTKPDCFHYNIMGVSAGRKDTVLAIKPGLNLFLYDFDLRLLYGIYKASSSGGMKLEPKAFNGAFPAQVRFNVYKDCFPLAESIFKNAIQENYFEKHKFKVELSVKQVDVSGSEALSTFPSTRTPLEIGYYWVPSKGAN 1661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8619262 8639552 - CmaCh12G010930.1 Cma12g01093 305583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01093 1661 SUPERFAMILY HAD-like 483 834 IPR036412 -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 830 904 - -
Cma12g01093 1661 Gene3D - 484 668 IPR023299 GO:0000166
Cma12g01093 1661 Gene3D - 669 834 IPR023214 -
Cma12g01093 1661 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Cma12g01093 1661 SFLD C1.7: P-type atpase like 469 955 - -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 1289 1507 - -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 1225 1244 - -
Cma12g01093 1661 Coils Coil 1294 1314 - -
Cma12g01093 1661 Coils Coil 896 916 - -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 1413 1471 - -
Cma12g01093 1661 Pfam E1-E2 ATPase 256 467 - -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 1301 1339 - -
Cma12g01093 1661 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Cma12g01093 1661 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Cma12g01093 1661 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Cma12g01093 1661 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Cma12g01093 1661 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Cma12g01093 1661 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 42 1149 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Cma12g01093 1661 ProSiteProfiles DCD domain profile. 1512 1639 IPR013989 -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 1481 1507 - -
Cma12g01093 1661 SFLD p-type atpase 469 955 IPR044492 -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 1193 1213 - -
Cma12g01093 1661 SUPERFAMILY Calcium ATPase, transduction domain A 256 387 IPR008250 -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 862 899 - -
Cma12g01093 1661 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1169 IPR023298 -
Cma12g01093 1661 SMART dcd 1512 1643 IPR013989 -
Cma12g01093 1661 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 774 828 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g01093 1661 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 515 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g01093 1661 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 847 861 - -
Cma12g01093 1661 MobiDBLite consensus disorder prediction 1193 1244 - -
Cma12g01093 1661 PANTHER CATION-TRANSPORTING ATPASE 1 1186 - -
Cma12g01093 1661 Pfam Development and cell death domain 1515 1631 IPR013989 -
Cma12g01093 1661 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Cma12g01093 1661 Gene3D - 224 388 - -
Cma12g01093 1661 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1186 - -
Cma12g01093 1661 CDD P-type_ATPase_cation 170 1107 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01166 Cma12g01093 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01722 Cma-Chr6:10553960 Cma12g01093 Cma-Chr12:8619262 1.11E-23 dispersed
Cma12g01093 Cma-Chr12:8619262 Cma09g00290 Cma-Chr9:1192471 4.36E-17 dispersed
Cma05g01167 Cma-Chr5:9044700 Cma12g01093 Cma-Chr12:8619262 0 transposed
Cma12g01093 Cma-Chr12:8619262 Cma05g01166 Cma-Chr5:9040294 7.03E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01093 K14950 - csv:101215828 2215.65