Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01098 ATGGTTGCTCAAAGGAAGGGAGCATCGCGGGTTTCCGAGGACCCCGAGGAGCTGGCAAGAGTTTCGTTGCAGGCTGTTCTTCTTGCTGATAGCTTTACCACTAAGTTTCATCCCATAACGCTTGAACGCCCAAAGGTATTATTGCCGTTGGTAAATGTCCCGATGATTAATTATACTTTATCTTGGCTCGAATCGGCTGGTGTTGAGGAGGTGTTTGTATTTTGCTGTGCTAATTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCTGTTAGTGCTGGAGATGCTTTGCGTTTGATCTATGAACGAAATGTGATACATGGTGATTTTGTTCTTATCACTGGAGACACAATAAGCAACATGTCACTTAGGCGAGCTCTTCAAGAACACAAGGAAAGAAAGAAGAAAGATAGTAATGCTGTAATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCTATCACACACCAATCTCGGCTTGGCACTGATGAGCTATTTATGGCAATTGATCCTAATACTAAGCAGCTCGTGTACTATGAGGATAAGGCTGACAATTCAAAAGGAATTATACATCTTGACAAGTCACTGCTAATGGATAATCCTTCCATGTCACTTCATAACGATATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGTCTGTTTACCGACAATTTTGACTACCAACATCTTCGTCGTCATTTTGTCAAGGGTTTGCTCTTAGATGATATCATGGGTTACAAGATTTACACGCATGAAATTTGCTCAAGCTATGCAGCTAGAATTGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAGAGGTGGACATATCCACTAGTACCAGATGTTAAATTCTTTGGGAATTCTGCTTACAAACTTGAAAGGCAGGGAATGTATAGAGCATCAGAAATACTGCAGGCACGTTCTGCACAGGTTGGTCCATTTACTGTTATTGGAGATAACAGCAAAATTGGTGGCAACACCAAAATTACAAATTCAATTATTGGGCAAGGTTGTAGTATTGGATCAAATGTTACAATTGAAGGCTCTTATATATGGGACAATGTCACCATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTATGTGATGGAGTTATTATAAAGTCAGGAGCAGAACTCAAACCTGGTGTAATTTTGTCTTTCAAGGTTATTGTCGGGGATCAGTTTGTTGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCGACCAATCAAGATAGCGATGAGGAGCTCGAATATGCAGACAATAGCAGTGGCATTGTAGAATTTGCAGGTACAACGGACAAGTTAAGTAGTGAACAGTCCAAATCGCTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGTAATGGAGGTATAATAGGATATGTTTGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTTCCAATAAACTTGAGAAGGCTCTGCAAGCGGCAGATGATGAGTTGGAGTTAACTCAAGATTCGAATGTTCTACCAACTTCAGGGGAGTTAAAGTCCGACTCAAATTTCTCAGATGGTGATGACAACGAAGACTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTCGAAGCAACGTTTCTGAGGGCTGTGCATGAAAACATTAAAGTAGACAATGTAATTTTGGAAGTGAATTCATTGCGGTTGTCATATAATAAGGTGGCTGCAGATTGTGCAGGAGCAATATTTTATTCATTGATGAAATTTGCCTATGATTCTCCATATGGTTCATCTAGTGAATTACTGCAAAACACTACAAATATAATTACGAAATGGAAAAAGCTTTTGAAGTACTACCTTGCTGACATGGATGAAGAGATTGAAGTGATATTAAAATTCGAAGAGATATGCTTGGAATCTGCCAAGGAGTTTACTCCACATTTTACCAAGATCTTATGTCATCTATATGACCAAGAAATCATTCAAGAAGATGCTATTCTGAGGTGGGACGATGAGAAAAAAGAAGCAGATGATTCGGATAAACTCTTCGTCAAGCAGGCAGAGAAATTCATTGAATGGTTAAGAGTTGCATCAGAAGAGGAAGAAGAAGAGGAAGAATAG 2190 40.09 MVAQRKGASRVSEDPEELARVSLQAVLLADSFTTKFHPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSVSAGDALRLIYERNVIHGDFVLITGDTISNMSLRRALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDPNTKQLVYYEDKADNSKGIIHLDKSLLMDNPSMSLHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGGNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVIIKSGAELKPGVILSFKVIVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVEFAGTTDKLSSEQSKSLEMQGWPASELGNGGIIGYVWSICEGSVEEEWRHSVAPIPSNKLEKALQAADDELELTQDSNVLPTSGELKSDSNFSDGDDNEDSRDDSIHFEKEVEATFLRAVHENIKVDNVILEVNSLRLSYNKVAADCAGAIFYSLMKFAYDSPYGSSSELLQNTTNIITKWKKLLKYYLADMDEEIEVILKFEEICLESAKEFTPHFTKILCHLYDQEIIQEDAILRWDDEKKEADDSDKLFVKQAEKFIEWLRVASEEEEEEEE 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8683389 8694695 + CmaCh12G010980.1 Cma12g01098 305588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01098 729 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Cma12g01098 729 PANTHER - 9 727 - -
Cma12g01098 729 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Cma12g01098 729 ProSiteProfiles W2 domain profile. 556 727 IPR003307 GO:0005515
Cma12g01098 729 Pfam Bacterial transferase hexapeptide (six repeats) 340 373 IPR001451 -
Cma12g01098 729 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 369 IPR029044 -
Cma12g01098 729 SUPERFAMILY ARM repeat 562 718 IPR016024 -
Cma12g01098 729 MobiDBLite consensus disorder prediction 528 543 - -
Cma12g01098 729 Gene3D Hexapeptide repeat proteins 319 453 - -
Cma12g01098 729 Pfam Nucleotidyl transferase 25 168 IPR005835 GO:0009058|GO:0016779
Cma12g01098 729 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 9 727 - -
Cma12g01098 729 Pfam eIF4-gamma/eIF5/eIF2-epsilon 648 727 IPR003307 GO:0005515
Cma12g01098 729 SMART 542_3 636 723 IPR003307 GO:0005515
Cma12g01098 729 CDD LbH_eIF2B_epsilon 341 419 - -
Cma12g01098 729 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 11 303 IPR029044 -
Cma12g01098 729 Coils Coil 511 531 - -
Cma12g01098 729 Gene3D - 549 728 - -
Cma12g01098 729 MobiDBLite consensus disorder prediction 528 557 - -
Cma12g01098 729 CDD W2_eIF2B_epsilon 557 721 IPR044123 GO:0005085|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00992 Cma-Chr10:5146070 Cma12g01098 Cma-Chr12:8683389 2.25E-23 dispersed
Cma11g00800 Cma-Chr11:3908126 Cma12g01098 Cma-Chr12:8683389 1.87E-14 dispersed
Cma12g01098 Cma-Chr12:8683389 Cma15g00110 Cma-Chr15:498294 3.06E-08 dispersed
Cma12g01098 Cma-Chr12:8683389 Cma05g01174 Cma-Chr5:9100849 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01098 K03240 - csv:101217025 1288.48