Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01100 ATGTTTGATAGAAAAAAGTCGAAACCTAACCCCAGACTGAGTAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTCTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCTGATACCTTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGACATGTTGACCGGTAAAGTTGTTGCACTGAAGAAGGTCCGATTTGACAATTTAGAGCCAGAAAGTGTAAGATTTATGGCCAGAGAGATTCTCATTTTGCGGCGTCTAGATCATCCTAATGTTGTAAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTATATGGAGCATGATTTAGCTGGACTTGCTGCAAACCCATCCATCAAATTTACAGAGGCTCAGGTCAAGTGTTTCATGAAACAACTGCTATCAGGACTCGAGCATTGTCACAACCACAGGGTGCTTCATCGTGATATTAAGGGTTCGAATCTTCTTATTGATGGTGAAGGGATGCTTAAGATTGCGGACTTTGGACTAGCTACTTTCTTTGATCCAAAACTCAAGCACCCTTTGACTAATCGTGTTGTTACATTATGGTATCGATCTCCAGAGCTTCTACTAGGTGCAACTCATTATGGTGTAGGCATCGACCTTTGGAGTGCAGGTTGTATTTTGGCAGAGTTATTAGCTGGGAGGCCCATAATGCCTGGCCGTACAGAGGTTGAACAACTACATAAGATATTCAAGCTGTGTGGCTCACCTTCAGATGAGTATTTGAAGAGAGCGAAGTTGCCCAATGCAGCCTTATTTAGGCCCAGAGAACCTTATAAGAGATGTATAAGAGAGACCTTTAAAGATTTCCCTCCATCATCATTTTCTCTTATAGATACACTTCTTGCAATTGATCCTGCTGAGAGAACGACAGCTAGAGATGCATTGAAAAGCGAGTTTTTCGTTACAGAACCTTATGCATGTGAACCTTCCAGTCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCTAAAAGACGGGATGATGAAGCGCGAAGACAAAGAGCAGCAAGTAAACTGCAGAACGATCATGTGAAGAAGACACGTCCACGTAACCGTGCTGGTAGGGCCATTCCTATTCAAGGAGCCAATGCAGAACTCCAATCAAATATTGACAGACGACGTTTAATTACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAGGACGGGGCACTCGGATTCACATTGGGATACTCACGTCATATTGATCCAGCTGCTGTTCCTTCTGATGTTGCATTCAGTTCCACATCATTCGGCTATCCAAACAAATTCGACGAAACCTGGTCCGGACCATTGGTCGAGTCTTCCGACATCGGTGCTCAAAGGCAGAAGTATCCGGGAGGCGATGCAAAAGAACGACAATCAACCCAATCTTCAGTTAAAGGGAAAAAGTTATGA 1521 44.25 MFDRKKSKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMKQLLSGLEHCHNHRVLHRDIKGSNLLIDGEGMLKIADFGLATFFDPKLKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNAALFRPREPYKRCIRETFKDFPPSSFSLIDTLLAIDPAERTTARDALKSEFFVTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDHVKKTRPRNRAGRAIPIQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAAVPSDVAFSSTSFGYPNKFDETWSGPLVESSDIGAQRQKYPGGDAKERQSTQSSVKGKKL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8707865 8715032 - CmaCh12G011000.1 Cma12g01100 305590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01100 506 MobiDBLite consensus disorder prediction 465 506 - -
Cma12g01100 506 Pfam Protein kinase domain 52 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01100 506 ProSiteProfiles Protein kinase domain profile. 52 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01100 506 MobiDBLite consensus disorder prediction 1 22 - -
Cma12g01100 506 Gene3D Phosphorylase Kinase; domain 1 39 134 - -
Cma12g01100 506 SMART serkin_6 52 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01100 506 MobiDBLite consensus disorder prediction 416 436 - -
Cma12g01100 506 PANTHER CELL DIVISION PROTEIN KINASE 14 484 - -
Cma12g01100 506 PANTHER OS01G0367700 PROTEIN 14 484 - -
Cma12g01100 506 MobiDBLite consensus disorder prediction 354 383 - -
Cma12g01100 506 SUPERFAMILY Protein kinase-like (PK-like) 47 341 IPR011009 -
Cma12g01100 506 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Cma12g01100 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cma12g01100 506 MobiDBLite consensus disorder prediction 346 397 - -
Cma12g01100 506 CDD STKc_CDK9_like 52 336 - -
Cma12g01100 506 Gene3D Transferase(Phosphotransferase) domain 1 135 376 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g01091 Cma12g01100 CCT
Cma10g01091 Cma12g01100 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00772 Cma-Chr7:3464738 Cma12g01100 Cma-Chr12:8707865 5.26E-147 dispersed
Cma08g00152 Cma-Chr8:822553 Cma12g01100 Cma-Chr12:8707865 1.11E-11 dispersed
Cma11g01252 Cma-Chr11:8335758 Cma12g01100 Cma-Chr12:8707865 0 dispersed
Cma12g01100 Cma-Chr12:8707865 Cma14g01644 Cma-Chr14:12296897 0 dispersed
Cma12g01100 Cma-Chr12:8707865 Cma06g01464 Cma-Chr6:9351664 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68974 PF00069 Pkinase 4.80E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01100 K08819 - csv:101217497 938.332