Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01107 ATGGATGGTTTCTCAGATCTTGAGCCCGATTGCTCTGAATTCGTTGAAATTGATCCCACTGGCCGATATGGCAGATATAATGAAATTTTAGGAAAAGGGGCTTCAAAAACAGTTTACAGAGCTTTTGATGAGTATAATGGAATTGAAGTAGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAAAGTCCTGAAGATCTGGAACGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAACATAGAAATATTATGAAATTCTACACTTCTTGGGTTGATATTGCTAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGTACTCTTAGACAGTATAGGTTGAAGCATAAACGAGTTAATATTAGAGCTGTGAAGCATTGGTGTAGGCAGATTTTGAAGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTATCATCCATAGAGATCTCAAGTGTGATAATATCTTTGTTAATGGTAATCAAGGGGAGGTTAAGATTGGTGATCTTGGACTTGCTGCTATTCTCAGGAAATCTCATGCTGATCATTGTGTAGGAACACCAGAGTTTATGGCTCCAGAAGTGTATGCAGAAGCATATAACGAATTAGTCGATATTTACTCATTCGGGATGTGCGTTCTCGAGATGATAACGTTCGAATATCCATACAGCGAATGCACTCATCCTGCTCAGATCTACAAGAAAGTCGTATCCGGGAAAAAACCAGACGCCTTGTACAAAGTGAAAGATCCCGAAGTGCGACAGTTCATCGATAAGTGTTTGGCATCGGTTTCATTTCGACTCTCGGCAGCACAGCTTTTGAGTGATCCTTTCCTTCAAGTCGATAATGGCGAATATGATCTAAGACCTGTCAATTACGGGAGAGGATTCGACGATGTATGCCCTCTTATAAGACGTGACAGCTCCTTTTGTAATGGATATCCATATGATTATAGTTTCGAAGCTTCGAGTGAATCGGGTTACCATCCGATTGATCACGAAACCAATGGAATCGAGCTTTTCGAGTATTATGAAGGTGAACATTCTGAAGATGTTGATATTAGCATTAAAGGGAAGATGAGAGAAGATGGTAGCATCTTCTTAAGACTCAGAATTACTGATAAAGAAGGACTTATTAGGAACATTTACTTCCCGTTCGATGTCGAGACGGATACAGCATTAAGCGTTGCAACAGAAATGGTAGCGGAGCTAGATATTACAGATCAAGACGTGACGAGAATTGCTGATATGATTGACGGAGAAATCGCTTCCTTGGTTCCCGAATGGAGACCAGGTCCGGGAATTGAGGAAACGCCTCGTTTTGCTTGTCATAATTGTGCTACTACTTCTTACAACAATGCTTCATCAAATGGTCTTTCATTGAGGAATCCTGGTGGAAAAAACTTGGACCTAGCTCAATGTTGTGGACATCGATATGCTTCAATACACGGTCGTTTCGAGGAGATAATGTATCAAGCTGATGAATCCGAGCATCATCCAGTAGAGGGTGCACCGAATATATCAAGCTTGAATTATCCTGAAATATGGGGACGTCACGAAAGCCGTGAACTTAGCTCAATGAGCTCACGACACAGCCACTCGGATGAAGATTACGAGAAAACAGATCGACCAAGTATGGTCACGGATGCGAAAGAAACGATCATGGAAAGTAAAACCGCTCCTAATACGAGAACGTCGCTTAGGGACCTGATGAATTCCCTTTCTTTCTTGGAAATGCCTTCGTTATATGAGCCTCGAGATATCGATGAAAATGATGCCCAGCAAGAACTGAGATGGATTAAGGCAAAGTACCAAATGGAATTAAACAAGCTCAAAGAACAAAAAATGGAGAATGGGACACTGGTAGGCCACGACCAAACCCTCGACTGGTCCGATCGAGATACGAACCGAAATAGTACCGAGAGCCATGTTTATATCAGTAATAGCTGTTACGGTTCAGATGCTCGGAAGGTCGTGGAATCGCCTGTCGTGGAGAAGGTTGTCACGGCTAAAAATGCCTGTAATGGTTCATTGCTTCCAAGCTCTCTTCATAGAGCAATCTCTCTACCGGTTGATGCTGTTCATATGTAA 2097 41.54 MDGFSDLEPDCSEFVEIDPTGRYGRYNEILGKGASKTVYRAFDEYNGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLHYLHSHEPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCVLEMITFEYPYSECTHPAQIYKKVVSGKKPDALYKVKDPEVRQFIDKCLASVSFRLSAAQLLSDPFLQVDNGEYDLRPVNYGRGFDDVCPLIRRDSSFCNGYPYDYSFEASSESGYHPIDHETNGIELFEYYEGEHSEDVDISIKGKMREDGSIFLRLRITDKEGLIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFACHNCATTSYNNASSNGLSLRNPGGKNLDLAQCCGHRYASIHGRFEEIMYQADESEHHPVEGAPNISSLNYPEIWGRHESRELSSMSSRHSHSDEDYEKTDRPSMVTDAKETIMESKTAPNTRTSLRDLMNSLSFLEMPSLYEPRDIDENDAQQELRWIKAKYQMELNKLKEQKMENGTLVGHDQTLDWSDRDTNRNSTESHVYISNSCYGSDARKVVESPVVEKVVTAKNACNGSLLPSSLHRAISLPVDAVHM 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8766135 8769749 - CmaCh12G011070.1 Cma12g01107 305597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01107 698 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Cma12g01107 698 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Cma12g01107 698 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01107 698 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 669 - -
Cma12g01107 698 CDD STKc_WNK 22 281 - -
Cma12g01107 698 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Cma12g01107 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Cma12g01107 698 Coils Coil 596 616 - -
Cma12g01107 698 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01107 698 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01107 698 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 669 - -
Cma12g01107 698 Gene3D - 366 431 - -
Cma12g01107 698 MobiDBLite consensus disorder prediction 525 551 - -
Cma12g01107 698 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 369 423 IPR024678 GO:0004674|GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01185 Cma12g01107 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01107 Cma-Chr12:8766135 Cma17g00238 Cma-Chr17:1210638 0 dispersed
Cma11g01005 Cma-Chr11:5426778 Cma12g01107 Cma-Chr12:8766135 0 transposed
Cma12g01107 Cma-Chr12:8766135 Cma05g01185 Cma-Chr5:9186004 0 wgd
Cma12g01107 Cma-Chr12:8766135 Cma08g01144 Cma-Chr8:7057164 1.18E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68975 PF00069 Pkinase 1.50E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01107 K08867 - csv:101219552 1185.63