Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01119 | ATGGCGTTGAGGTGCAGGAAAAGTGATGAGGTAGTTGAAGTTCTTAATCGTGAAGAACGCCTGGTTATGGCTAAAACTCACAAACGGAGGTGGAAGATGGCCTTTGCCGCCATTTATTTCACTAGAGCTCTCATCTCTCTGACGAGGAAGGTCACTGACCGTAAATCCGGCGCTCTTTTGCCGTCACTTTCGTTTGTTACTCTTGATGTGCAGGTTAATGATGATAGTACGGATTCTGGCGAGCAGCCGTGCATGGCAGGCTTTTTCGGCGTAGATCAGAAAGTTCTAAGTGAGATGGTGAGGGAGAAGGACTGTGAGTGTTTGAATCGATTTGGAGGCGTTGATGGACTGGCCAATCTTCTTAAAACTGATCCACATGACGGAATTTGTGCAACTCAGGATGATCTAACTTACAGAACAAACGCTTTTGGAACAAATACTTACTCGAAGCGCCACGGCAAAAGCTTCTTTAGTTACGTGATCGAAGCGTTTAACGATACAACAATAATCATTCTATTGATCTGTGCAGTGCTTTCTTTGGGATTTGGTATCAAACAACACGGTTGGGATGATGGATGGTACGACGGTGGCAGCATTGTCATCGCCATATTTCTGGTGGTCGTCGTTTCCGCCGCGAGCAACTTCAAGCAATCGCGACAGTTCGAGAAGCTTTCAAACGAGAGAGATGATATAAAAATCGAGGTCACCAGAGCCGGTCGACGCAAATCAGTATCGATATTCGAACTCCTTGTCGGAGACATCGTGTATTTGAAGATCGGAGATCAGATTCCCGCGGACGGAGTGTTCCTCGATGGACATTCGCTGAAGATCGACGAATCGAGCATGACTGGAGAGAGCGAACACGCTGAAGTAAATCACGGAATTAATCCATTTCTGCTATCAGGAACCAAAGTGAACGATGGATTTGGTGTGATGATGGTGACTTCTGTGGGAATGAACACAGCCTGGGGAGAAATGATGAGTTCAATTAGAAGGGAAATTAATGAGGAAACTCCATTGCAAGGTCGTCTGAACAAGATGACCGCCATTATCGGGAAGCTAGGACTGACGGTCGCCGTGGTGGTGCTTCTTGTTCTGCTGGTTCGCTATTTCACTGGTAGCACCGGCGAGTTCAATGGAAGCAAGACGAGGTTCGATGATGTTATGAATGCAGTTCTTGGCATGGTTGCGGCGGCTGTTACAATCGTTGTGGTGGCGATTCCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCCATGAAAAAGATGATGGCGGATAATGCAATGGTTCGGAAACTCTCTGCTTGTGAGACCCTGGGCTCAGCAACCACAATTTGTACTGATAAAACTGGTACCCTTACTTTGAATCAGATGAAAGTTACAGAGTTTTGGATTGGGGAAGATGAAATTATGAACATAGATTATTCCAATTCAAGGATTAGCAGTAAGGTTGTTGAATTACTGCACCAAGCAGTTGGATTGAACACAACTGGTAGTATTCAAACACCAGCTTCTTCATTGCCTCTAGAAACCTTCGGGAGTCCGACCGAGAAAGCGATACTTTCATGGGCGGCATTCGACCTGGATTTGAACTTGGATGAACTGAAGAAACAACATGAGATAATCCTGGTAGAGACTTTCAGTTCAGAGAAGAAGAGAAGTGGAGTTTCGACACGACGACACGGGACGAGGCTTGTTAATACACACTGGAAAGGAGCAGCAGAGATAATATTGGCTATGTGTTCATATTACTATGAGAAACAAGGAACAGCTAGAGCCATTGATGGTGAAATGAGAAGACAATTGACTGAAATAATCACAGCCATGGCAGAAAAAAGTCTCCGATGCATAGCCTTTGCTCACAAGTCGAATGAAGACGACGATATCCGAGACGTTCCTGCAAAACTCGACGAATCGGAATTGACATTACTCGGAATAGTTGGTTTGAAGGATCCTTGCAGGGCAGGAGTTAGAGAAGCTGTGGAATCATGTAGAGCTGCTGGAGTGAGTATCAAAATGGTGACGGGTGATAATCTGCACACAGCAACAGCCATAGCAATTGAATGTGGAATACTAAATCCCGATGACGACGCTACAAACAGCGAAGTAGTTGTGGAGGGCGTAAAATTTAGAAACTACACACCTGAGGAGAGGCTAGAAAAGATTGGGAACATCCGAGTGATGGCTAGATCTTCCCCATTTGACAAGCTTCTAATGGTACAGTGCTTGAAGAATCAAGGCCATGTGGTGGCAGTCACCGGGGATGGAACAAATGATGCCCCAGCTCTTCACGAGGCTGACATTGGCCTTTCCATGGGAATTCAAGGAACTGAAGTGGCAAAGGAGAGCTCCGACATCGTCATCTTAGACGATAACTTTACATCGGTCGTCACCGTCTTGAAATGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAGCTCACTGTGAACATTGCAGCATTAGTCATCAACTTCATCGCCGCTGTCTCGTCCGGTAAAGTCCCACTAACAGCGGTACAGCTACTATGGGTGAATCTCATCATGGACACCATGGGAGCTTTAGCCTTAGCTACTGAGCTACCCACCAACGATCTCATGACGAAAACGCCGGTCGGTCGATCCGATCCATTAGTAACGAAGATCATGTGGAGGAATCTCATAACTCAGGCTGTGTATCAAGTGACAGTCTTGCTGGTTTTGGAATTTAAAGGAAGTTCCATCTTCAATGTCAATGAGAAGGTTAAGAGCACACTGATCTTCAACACTTTTGTTCTATGCCAAATCTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAACATATTTGAAGGGCTACACAAAAGCAAGCTGTTTTTGGCAATAATTGTGATAACCTTAGCTTTTCAAGTGGTAATGGTTGAGGTTTTGGGAAGGTTTGCTAATACTGAGAGGTTGAATTGGGGCCAGTGGGGGGCATGTCTTGGCATAGCAGCTTTGTCTTGGCCAATTGGATGGCTATCCAAGTTGATACCAGTTTCAGCCCTGCAGTTTCCAAGGGGAAGAAACTCAGCACAATAA | 3081 | 45.18 | MALRCRKSDEVVEVLNREERLVMAKTHKRRWKMAFAAIYFTRALISLTRKVTDRKSGALLPSLSFVTLDVQVNDDSTDSGEQPCMAGFFGVDQKVLSEMVREKDCECLNRFGGVDGLANLLKTDPHDGICATQDDLTYRTNAFGTNTYSKRHGKSFFSYVIEAFNDTTIIILLICAVLSLGFGIKQHGWDDGWYDGGSIVIAIFLVVVVSAASNFKQSRQFEKLSNERDDIKIEVTRAGRRKSVSIFELLVGDIVYLKIGDQIPADGVFLDGHSLKIDESSMTGESEHAEVNHGINPFLLSGTKVNDGFGVMMVTSVGMNTAWGEMMSSIRREINEETPLQGRLNKMTAIIGKLGLTVAVVVLLVLLVRYFTGSTGEFNGSKTRFDDVMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETLGSATTICTDKTGTLTLNQMKVTEFWIGEDEIMNIDYSNSRISSKVVELLHQAVGLNTTGSIQTPASSLPLETFGSPTEKAILSWAAFDLDLNLDELKKQHEIILVETFSSEKKRSGVSTRRHGTRLVNTHWKGAAEIILAMCSYYYEKQGTARAIDGEMRRQLTEIITAMAEKSLRCIAFAHKSNEDDDIRDVPAKLDESELTLLGIVGLKDPCRAGVREAVESCRAAGVSIKMVTGDNLHTATAIAIECGILNPDDDATNSEVVVEGVKFRNYTPEERLEKIGNIRVMARSSPFDKLLMVQCLKNQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNIAALVINFIAAVSSGKVPLTAVQLLWVNLIMDTMGALALATELPTNDLMTKTPVGRSDPLVTKIMWRNLITQAVYQVTVLLVLEFKGSSIFNVNEKVKSTLIFNTFVLCQIFNEFNARKLEKKNIFEGLHKSKLFLAIIVITLAFQVVMVEVLGRFANTERLNWGQWGACLGIAALSWPIGWLSKLIPVSALQFPRGRNSAQ | 1026 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8851127 | 8854207 | - | CmaCh12G011190.1 | Cma12g01119 | 305609 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01119 | 1026 | Pfam | E1-E2 ATPase | 232 | 427 | - | - | |
Cma12g01119 | 1026 | SUPERFAMILY | HAD-like | 447 | 860 | IPR036412 | - | |
Cma12g01119 | 1026 | SFLD | p-type atpase | 431 | 809 | IPR044492 | - | |
Cma12g01119 | 1026 | Gene3D | - | 162 | 1008 | - | - | |
Cma12g01119 | 1026 | PANTHER | CATION TRANSPORTING ATPASE | 22 | 1006 | - | - | |
Cma12g01119 | 1026 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 98 | 1013 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Cma12g01119 | 1026 | Gene3D | - | 446 | 801 | IPR023214 | - | |
Cma12g01119 | 1026 | PRINTS | H+-transporting ATPase (proton pump) signature | 605 | 623 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g01119 | 1026 | PRINTS | H+-transporting ATPase (proton pump) signature | 756 | 772 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g01119 | 1026 | PRINTS | H+-transporting ATPase (proton pump) signature | 788 | 813 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g01119 | 1026 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 22 | 1006 | - | - | |
Cma12g01119 | 1026 | Gene3D | - | 133 | 331 | - | - | |
Cma12g01119 | 1026 | SMART | Cation_ATPase_N_a_2 | 110 | 184 | IPR004014 | - | |
Cma12g01119 | 1026 | SFLD | Haloacid Dehalogenase | 431 | 809 | - | - | |
Cma12g01119 | 1026 | Gene3D | - | 459 | 655 | IPR023299 | GO:0000166 | |
Cma12g01119 | 1026 | Pfam | haloacid dehalogenase-like hydrolase | 446 | 770 | - | - | |
Cma12g01119 | 1026 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 112 | 1014 | IPR023298 | - | |
Cma12g01119 | 1026 | Pfam | Cation transporter/ATPase, N-terminus | 113 | 179 | IPR004014 | - | |
Cma12g01119 | 1026 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 455 | 660 | IPR023299 | GO:0000166 | |
Cma12g01119 | 1026 | SUPERFAMILY | Calcium ATPase, transduction domain A | 233 | 329 | IPR008250 | - | |
Cma12g01119 | 1026 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 727 | 838 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g01119 | 1026 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 393 | 472 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g01119 | 1026 | PRINTS | P-type cation-transporting ATPase superfamily signature | 278 | 292 | - | - | |
Cma12g01119 | 1026 | PRINTS | P-type cation-transporting ATPase superfamily signature | 449 | 463 | - | - | |
Cma12g01119 | 1026 | PRINTS | P-type cation-transporting ATPase superfamily signature | 648 | 659 | - | - | |
Cma12g01119 | 1026 | PRINTS | P-type cation-transporting ATPase superfamily signature | 670 | 680 | - | - | |
Cma12g01119 | 1026 | PRINTS | P-type cation-transporting ATPase superfamily signature | 756 | 775 | - | - | |
Cma12g01119 | 1026 | PRINTS | P-type cation-transporting ATPase superfamily signature | 780 | 792 | - | - | |
Cma12g01119 | 1026 | Pfam | Cation transporting ATPase, C-terminus | 841 | 1011 | IPR006068 | - | |
Cma12g01119 | 1026 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 451 | 457 | IPR018303 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00724 | Cma-Chr5:4038867 | Cma12g01119 | Cma-Chr12:8851127 | 0 | dispersed | |
Cma08g00318 | Cma-Chr8:1808084 | Cma12g01119 | Cma-Chr12:8851127 | 0 | dispersed | |
Cma12g01119 | Cma-Chr12:8851127 | Cma14g00550 | Cma-Chr14:2735274 | 0 | dispersed | |
Cma19g00865 | Cma-Chr19:8056131 | Cma12g01119 | Cma-Chr12:8851127 | 6.16E-107 | dispersed | |
Cma12g01119 | Cma-Chr12:8851127 | Cma12g00923 | Cma-Chr12:7124315 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01119 | K01537 | - | csv:101218531 | 1615.9 |