Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01119 ATGGCGTTGAGGTGCAGGAAAAGTGATGAGGTAGTTGAAGTTCTTAATCGTGAAGAACGCCTGGTTATGGCTAAAACTCACAAACGGAGGTGGAAGATGGCCTTTGCCGCCATTTATTTCACTAGAGCTCTCATCTCTCTGACGAGGAAGGTCACTGACCGTAAATCCGGCGCTCTTTTGCCGTCACTTTCGTTTGTTACTCTTGATGTGCAGGTTAATGATGATAGTACGGATTCTGGCGAGCAGCCGTGCATGGCAGGCTTTTTCGGCGTAGATCAGAAAGTTCTAAGTGAGATGGTGAGGGAGAAGGACTGTGAGTGTTTGAATCGATTTGGAGGCGTTGATGGACTGGCCAATCTTCTTAAAACTGATCCACATGACGGAATTTGTGCAACTCAGGATGATCTAACTTACAGAACAAACGCTTTTGGAACAAATACTTACTCGAAGCGCCACGGCAAAAGCTTCTTTAGTTACGTGATCGAAGCGTTTAACGATACAACAATAATCATTCTATTGATCTGTGCAGTGCTTTCTTTGGGATTTGGTATCAAACAACACGGTTGGGATGATGGATGGTACGACGGTGGCAGCATTGTCATCGCCATATTTCTGGTGGTCGTCGTTTCCGCCGCGAGCAACTTCAAGCAATCGCGACAGTTCGAGAAGCTTTCAAACGAGAGAGATGATATAAAAATCGAGGTCACCAGAGCCGGTCGACGCAAATCAGTATCGATATTCGAACTCCTTGTCGGAGACATCGTGTATTTGAAGATCGGAGATCAGATTCCCGCGGACGGAGTGTTCCTCGATGGACATTCGCTGAAGATCGACGAATCGAGCATGACTGGAGAGAGCGAACACGCTGAAGTAAATCACGGAATTAATCCATTTCTGCTATCAGGAACCAAAGTGAACGATGGATTTGGTGTGATGATGGTGACTTCTGTGGGAATGAACACAGCCTGGGGAGAAATGATGAGTTCAATTAGAAGGGAAATTAATGAGGAAACTCCATTGCAAGGTCGTCTGAACAAGATGACCGCCATTATCGGGAAGCTAGGACTGACGGTCGCCGTGGTGGTGCTTCTTGTTCTGCTGGTTCGCTATTTCACTGGTAGCACCGGCGAGTTCAATGGAAGCAAGACGAGGTTCGATGATGTTATGAATGCAGTTCTTGGCATGGTTGCGGCGGCTGTTACAATCGTTGTGGTGGCGATTCCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCCATGAAAAAGATGATGGCGGATAATGCAATGGTTCGGAAACTCTCTGCTTGTGAGACCCTGGGCTCAGCAACCACAATTTGTACTGATAAAACTGGTACCCTTACTTTGAATCAGATGAAAGTTACAGAGTTTTGGATTGGGGAAGATGAAATTATGAACATAGATTATTCCAATTCAAGGATTAGCAGTAAGGTTGTTGAATTACTGCACCAAGCAGTTGGATTGAACACAACTGGTAGTATTCAAACACCAGCTTCTTCATTGCCTCTAGAAACCTTCGGGAGTCCGACCGAGAAAGCGATACTTTCATGGGCGGCATTCGACCTGGATTTGAACTTGGATGAACTGAAGAAACAACATGAGATAATCCTGGTAGAGACTTTCAGTTCAGAGAAGAAGAGAAGTGGAGTTTCGACACGACGACACGGGACGAGGCTTGTTAATACACACTGGAAAGGAGCAGCAGAGATAATATTGGCTATGTGTTCATATTACTATGAGAAACAAGGAACAGCTAGAGCCATTGATGGTGAAATGAGAAGACAATTGACTGAAATAATCACAGCCATGGCAGAAAAAAGTCTCCGATGCATAGCCTTTGCTCACAAGTCGAATGAAGACGACGATATCCGAGACGTTCCTGCAAAACTCGACGAATCGGAATTGACATTACTCGGAATAGTTGGTTTGAAGGATCCTTGCAGGGCAGGAGTTAGAGAAGCTGTGGAATCATGTAGAGCTGCTGGAGTGAGTATCAAAATGGTGACGGGTGATAATCTGCACACAGCAACAGCCATAGCAATTGAATGTGGAATACTAAATCCCGATGACGACGCTACAAACAGCGAAGTAGTTGTGGAGGGCGTAAAATTTAGAAACTACACACCTGAGGAGAGGCTAGAAAAGATTGGGAACATCCGAGTGATGGCTAGATCTTCCCCATTTGACAAGCTTCTAATGGTACAGTGCTTGAAGAATCAAGGCCATGTGGTGGCAGTCACCGGGGATGGAACAAATGATGCCCCAGCTCTTCACGAGGCTGACATTGGCCTTTCCATGGGAATTCAAGGAACTGAAGTGGCAAAGGAGAGCTCCGACATCGTCATCTTAGACGATAACTTTACATCGGTCGTCACCGTCTTGAAATGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAGCTCACTGTGAACATTGCAGCATTAGTCATCAACTTCATCGCCGCTGTCTCGTCCGGTAAAGTCCCACTAACAGCGGTACAGCTACTATGGGTGAATCTCATCATGGACACCATGGGAGCTTTAGCCTTAGCTACTGAGCTACCCACCAACGATCTCATGACGAAAACGCCGGTCGGTCGATCCGATCCATTAGTAACGAAGATCATGTGGAGGAATCTCATAACTCAGGCTGTGTATCAAGTGACAGTCTTGCTGGTTTTGGAATTTAAAGGAAGTTCCATCTTCAATGTCAATGAGAAGGTTAAGAGCACACTGATCTTCAACACTTTTGTTCTATGCCAAATCTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAACATATTTGAAGGGCTACACAAAAGCAAGCTGTTTTTGGCAATAATTGTGATAACCTTAGCTTTTCAAGTGGTAATGGTTGAGGTTTTGGGAAGGTTTGCTAATACTGAGAGGTTGAATTGGGGCCAGTGGGGGGCATGTCTTGGCATAGCAGCTTTGTCTTGGCCAATTGGATGGCTATCCAAGTTGATACCAGTTTCAGCCCTGCAGTTTCCAAGGGGAAGAAACTCAGCACAATAA 3081 45.18 MALRCRKSDEVVEVLNREERLVMAKTHKRRWKMAFAAIYFTRALISLTRKVTDRKSGALLPSLSFVTLDVQVNDDSTDSGEQPCMAGFFGVDQKVLSEMVREKDCECLNRFGGVDGLANLLKTDPHDGICATQDDLTYRTNAFGTNTYSKRHGKSFFSYVIEAFNDTTIIILLICAVLSLGFGIKQHGWDDGWYDGGSIVIAIFLVVVVSAASNFKQSRQFEKLSNERDDIKIEVTRAGRRKSVSIFELLVGDIVYLKIGDQIPADGVFLDGHSLKIDESSMTGESEHAEVNHGINPFLLSGTKVNDGFGVMMVTSVGMNTAWGEMMSSIRREINEETPLQGRLNKMTAIIGKLGLTVAVVVLLVLLVRYFTGSTGEFNGSKTRFDDVMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETLGSATTICTDKTGTLTLNQMKVTEFWIGEDEIMNIDYSNSRISSKVVELLHQAVGLNTTGSIQTPASSLPLETFGSPTEKAILSWAAFDLDLNLDELKKQHEIILVETFSSEKKRSGVSTRRHGTRLVNTHWKGAAEIILAMCSYYYEKQGTARAIDGEMRRQLTEIITAMAEKSLRCIAFAHKSNEDDDIRDVPAKLDESELTLLGIVGLKDPCRAGVREAVESCRAAGVSIKMVTGDNLHTATAIAIECGILNPDDDATNSEVVVEGVKFRNYTPEERLEKIGNIRVMARSSPFDKLLMVQCLKNQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNIAALVINFIAAVSSGKVPLTAVQLLWVNLIMDTMGALALATELPTNDLMTKTPVGRSDPLVTKIMWRNLITQAVYQVTVLLVLEFKGSSIFNVNEKVKSTLIFNTFVLCQIFNEFNARKLEKKNIFEGLHKSKLFLAIIVITLAFQVVMVEVLGRFANTERLNWGQWGACLGIAALSWPIGWLSKLIPVSALQFPRGRNSAQ 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8851127 8854207 - CmaCh12G011190.1 Cma12g01119 305609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01119 1026 Pfam E1-E2 ATPase 232 427 - -
Cma12g01119 1026 SUPERFAMILY HAD-like 447 860 IPR036412 -
Cma12g01119 1026 SFLD p-type atpase 431 809 IPR044492 -
Cma12g01119 1026 Gene3D - 162 1008 - -
Cma12g01119 1026 PANTHER CATION TRANSPORTING ATPASE 22 1006 - -
Cma12g01119 1026 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 98 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cma12g01119 1026 Gene3D - 446 801 IPR023214 -
Cma12g01119 1026 PRINTS H+-transporting ATPase (proton pump) signature 605 623 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g01119 1026 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g01119 1026 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g01119 1026 PANTHER CALCIUM-TRANSPORTING ATPASE 22 1006 - -
Cma12g01119 1026 Gene3D - 133 331 - -
Cma12g01119 1026 SMART Cation_ATPase_N_a_2 110 184 IPR004014 -
Cma12g01119 1026 SFLD Haloacid Dehalogenase 431 809 - -
Cma12g01119 1026 Gene3D - 459 655 IPR023299 GO:0000166
Cma12g01119 1026 Pfam haloacid dehalogenase-like hydrolase 446 770 - -
Cma12g01119 1026 SUPERFAMILY Calcium ATPase, transmembrane domain M 112 1014 IPR023298 -
Cma12g01119 1026 Pfam Cation transporter/ATPase, N-terminus 113 179 IPR004014 -
Cma12g01119 1026 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 660 IPR023299 GO:0000166
Cma12g01119 1026 SUPERFAMILY Calcium ATPase, transduction domain A 233 329 IPR008250 -
Cma12g01119 1026 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 727 838 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g01119 1026 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 393 472 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g01119 1026 PRINTS P-type cation-transporting ATPase superfamily signature 278 292 - -
Cma12g01119 1026 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Cma12g01119 1026 PRINTS P-type cation-transporting ATPase superfamily signature 648 659 - -
Cma12g01119 1026 PRINTS P-type cation-transporting ATPase superfamily signature 670 680 - -
Cma12g01119 1026 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Cma12g01119 1026 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Cma12g01119 1026 Pfam Cation transporting ATPase, C-terminus 841 1011 IPR006068 -
Cma12g01119 1026 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00724 Cma-Chr5:4038867 Cma12g01119 Cma-Chr12:8851127 0 dispersed
Cma08g00318 Cma-Chr8:1808084 Cma12g01119 Cma-Chr12:8851127 0 dispersed
Cma12g01119 Cma-Chr12:8851127 Cma14g00550 Cma-Chr14:2735274 0 dispersed
Cma19g00865 Cma-Chr19:8056131 Cma12g01119 Cma-Chr12:8851127 6.16E-107 dispersed
Cma12g01119 Cma-Chr12:8851127 Cma12g00923 Cma-Chr12:7124315 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01119 K01537 - csv:101218531 1615.9