Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01130 ATGAATGCCAATGCCCATGTGATGTTTTCTCTTTTCTTCCTCTTCCTTGCCCTCTTCACCCGTGTTTATTCCTCTCCTCTTCATGCTTCCGATCCGCCTTTGTTGTTGCGCTGTGGTTCAAATGAAGAATCTACCGATGATATTGGCCGAAAATGGACTCCCGATTCCAAATTCCTCCCCTCCAAGAATACCCTAACGGCGTCGGCGGGGTTTCAAGATCCGTCGATGACAGCGCAGGTTCCGTATATGGAAGCTAGGATCTTCACTTCTGCGACGGCGTATAAATTTCCGATCAAACCTGGTAATCGCTATTGGCTTCGACTCCATTTCTATCCTTCCACTTATGGCCTTCATGATTCTGTTAATTCCTTTTTCACCATCAATGCGAATGATTTGTCCCTTGCGAAGAATTTTAGTGTTCATCTCACTTGTCAGGCCTTAACTCAGGCCTACATTATCCGCGAATTTACTCTCGCGGCTTCCACATCTGAAACCCTAAATTTGACCTTCACCCCTGTTACTGGATTTGCTTTTGTGAATGGGATTGAATTGATTCAAATGCCGGAGATCTTTGGGGAAGCAATGATGATTGGTGGAGGGCGGCAAAGTACGGACGTTACGAAGATGAGTATGCAGACGATAGCGAGATTGAACGTCGGTGGGAGCTACATTTCTCCGGTGAACGACTCGGGTTTGACAAGAGCATGGTATGATGATTTTCCTTATCTTTATGGTGCTGCGGCGGGTGTGGCGGTAGAAGCTGAGAAGAAGTTGGTGATTAAGTATAAAGATATGCCGAGTTATATAGCACCCGAGGAAGTTTACAGGTCGTTGAGATCAATGGGGACAGAAGCGAGTGTGAATGGGAATTACAATTTGACATGGCTGATTCCTAATATTGATCCAGGATTCTTGTATCTAATGAGATTGCATTTCTGTGATCTGACATTGAGTAGGGCAAATCAGGTGGTGTTTGATGTGTTCATCAACAACCAAACGGCGGACACAAGGGGGATCGATGTGATAGCTTGGTCGGGGGGGCGGGGGGTGCCAAAATACAGGGATTATGTAGTGTTTTCGCCAGAAGCAGCAACATTGCAGGAGATATGGCTTGCATTGCATCCGAAGTATTCGGAGTCGCCGGAGTTTGCGGATGCAATGTTGAATGGGCTAGAGATATTCAAGCTGGAATCTGGGAAGAACTTGGCAGGGATGAATCCTCAAACGTCGGCATTTAGGATGAAGCTTGATGGGCAAGGAGACAGAAAGTTTGAAGCAAAGAGCAACAATGTTGAAGTGATTGGAGGGGCTGCAGGGGGGGCTGCAGCATTTGTTGTGGTGGCACTTTGCTTTGCAGTGTACCAAAGGAAGAACAGAATGCCAGGGAGTGATTCACATACAGCTAGCTGGTTACCGATCTATGGGAATTCGCATTCGAGTGGGAGCAAATCAACCGTGTCTGGGAAGAGTATGGCGAGTAATTTGGCCCAAGGTTTGGCGCGGCATTTTTCGCTTGCAGAGATTTTAAATGCTACGAAAAACTTTAGTGAGTCTAATGTGATTGGGGTTGGAGGATTCGGGAAGGTGTATAAGGGAGTGATCGATGGAGGAACGAAAGTTGCTATTAAAAGGTCGAACCCGCAGTCGGAACAAGGAGTTCACGAATTCCTTACAGAAATAGATTTGCTTTCGAAGCTGAGGCACAAACATTTGGTATCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTGATTTATGATTACATGGGTTTGGGGACTCTGAGGGAGCATCTGTATAAGACCAATAATAATAAAACTCGTCTCTCATGGAAGAAAAGGCTGGAGATTTGCATTGGAGCAGCTAGAGGACTTCACTACCTTCACACGGGAGCACAGTACACCATCATTCATAGAGATGTCAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCGAAGGTTTCCGATTTTGGCCTCTCGAAAACGGGTCCGAACATGGCTAACGGTGGTCATGTTAGCACCGTCGTTAAGGGTAGCTTTGGCTACTTAGATCCAGAGTACTTCAGAAGGCAACAACTCACTGAAAAATCTGATGTCTATTCTTTTGGAGTTGTTCTGTTTGAAGTGTTGTGTGCAAGGCCTGCTTTAAACCCAAGCCTCCCCAAGGAACAGGTTAGTCTTGCGGATTGGGCGTTGCACTGCAAACGCAAAGGAGTTCTTGACGATCTCATTGATCCCTACCTCAAAGGCAAAATCACCCCTGATAGCTTGAAGAAGTTTGCTGATGCAGCTGAGAAATGCCTCGACGACCATGGAGCCGAGCGTCCTTCTATGGGTGATGTCTTGTGGAACCTTGAATTTGCTCTCCAACTACAAGAAAGTGCCGATGGTGGTGGCTCGAGTCACAGATCGAGAATAAACAGCAGCAGCAGCAACAACAACAACAATAATGACGACCACATAGATAACCACAGAAACCAAGACATGACTGCTCATTACAACAACCTCAGCCTTGGAAGTGAACAAGATTTACTCCAACAAACTGATGAACAAGAGAGTACTGAAATCTTCTCCCAACTTGTCCATCCCTCAGGTCGGTAA 2610 45.9 MNANAHVMFSLFFLFLALFTRVYSSPLHASDPPLLLRCGSNEESTDDIGRKWTPDSKFLPSKNTLTASAGFQDPSMTAQVPYMEARIFTSATAYKFPIKPGNRYWLRLHFYPSTYGLHDSVNSFFTINANDLSLAKNFSVHLTCQALTQAYIIREFTLAASTSETLNLTFTPVTGFAFVNGIELIQMPEIFGEAMMIGGGRQSTDVTKMSMQTIARLNVGGSYISPVNDSGLTRAWYDDFPYLYGAAAGVAVEAEKKLVIKYKDMPSYIAPEEVYRSLRSMGTEASVNGNYNLTWLIPNIDPGFLYLMRLHFCDLTLSRANQVVFDVFINNQTADTRGIDVIAWSGGRGVPKYRDYVVFSPEAATLQEIWLALHPKYSESPEFADAMLNGLEIFKLESGKNLAGMNPQTSAFRMKLDGQGDRKFEAKSNNVEVIGGAAGGAAAFVVVALCFAVYQRKNRMPGSDSHTASWLPIYGNSHSSGSKSTVSGKSMASNLAQGLARHFSLAEILNATKNFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPQSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLIYDYMGLGTLREHLYKTNNNKTRLSWKKRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMANGGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGVLDDLIDPYLKGKITPDSLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGGSSHRSRINSSSSNNNNNNDDHIDNHRNQDMTAHYNNLSLGSEQDLLQQTDEQESTEIFSQLVHPSGR 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8913915 8916524 + CmaCh12G011300.1 Cma12g01130 305620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01130 869 Gene3D - 209 396 - -
Cma12g01130 869 Gene3D - 34 188 - -
Cma12g01130 869 Pfam Protein tyrosine and serine/threonine kinase 518 734 IPR001245 GO:0004672|GO:0006468
Cma12g01130 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Cma12g01130 869 ProSiteProfiles Protein kinase domain profile. 515 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01130 869 SMART serkin_6 515 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01130 869 MobiDBLite consensus disorder prediction 797 828 - -
Cma12g01130 869 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Cma12g01130 869 PANTHER RECEPTOR-LIKE PROTEIN KINASE ANXUR2 25 833 - -
Cma12g01130 869 Gene3D Transferase(Phosphotransferase) domain 1 591 811 - -
Cma12g01130 869 SUPERFAMILY Protein kinase-like (PK-like) 501 786 IPR011009 -
Cma12g01130 869 MobiDBLite consensus disorder prediction 849 869 - -
Cma12g01130 869 MobiDBLite consensus disorder prediction 797 820 - -
Cma12g01130 869 Pfam Malectin-like domain 38 395 IPR024788 -
Cma12g01130 869 PANTHER OS07G0166700 PROTEIN 25 833 IPR045272 GO:0004714|GO:0006468
Cma12g01130 869 CDD STKc_IRAK 521 789 - -
Cma12g01130 869 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01217 Cma-Chr7:6686722 Cma12g01130 Cma-Chr12:8913915 0 dispersed
Cma12g01130 Cma-Chr12:8913915 Cma09g00890 Cma-Chr9:4385407 0 dispersed
Cma12g01130 Cma-Chr12:8913915 Cma03g00288 Cma-Chr3:3805129 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68977 PF12819 Malectin_like 3.60E-35 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01130 - - cmax:111465432 1660.97