Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01141 ATGGGTACACCAGTTAACATTATTGTCGGTTCTCATGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGATTGGTATCCAAGATTACAGGGCAGGAAGCTGAGATCGAAGCCAGCAATGGAAAGAAAGTTGTTGCAAAATTATCCAAAATATATCCCAAAGATATGGAAGCTCCTGCTGGTGGCGTCGATGATATGACGAAGCTATCTTACCTGCACGAGCCAGGAGTTCTACAAAATTTAAAAAGTCGATATGAACTCAACGAAATCTATACATACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCATCAATACAAAGGAGCACCATTTGGAGAGCTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCTTACAGGGCAATGGTTATTGAGGGTAAAAGTAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACTACAAAGATGCTTATGCGGTACCTTGCGTTTTTAGGTGGTAGGGCGGCTACTGAAGGACGAACGGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTCAGAAATAACAATTCCAGTCGCTTTGGTAAATTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCCGAACTTACCTTCTTGAGAGATCTCGTGTTTGCCAAGTTTCCGATCCCGAGCGCAATTATCACTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGGAAATCGAAAAATACAAGCTGGGAAATCCTAAATCATTTCATTATCTTAATCAATCAAATTGCTATGAACTGGTTGATGTAAGTGATGCTCATGACTATCTTGCCACTAGAAGAGCTATGGATGTTGTTGGAATAAGTGCCAAGGAGCAGGAAGCAATTTTTAGAGTTGTTGCTGCAATTCTTCATCTCGGAAACATTGCATTTACGAAGGGCAAAGACGGCGACTCATCAGTTCCAAAAGACGACATGGCCAAGTTTCATCTTAAAATGACTTCGGAGCTTCTCATGTGTGATAATGCTGGCCTTGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTGATCAAACGTAGCCTGGATCCTCAAAGTGCGGCTATTAGTCGGGATGGTTTGGCCAAAACGATATATTCTCGGCTATTCGACTGGCTGGTTGATAAAATCAATGTCTCAATTGGACAAGATCCTAATTCCAAGTCCTTGATTGGGGTTCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACGAAAGAAGAGATCGATTGGAGTTATATTGAGTTCGTTGACAACCAAGATGTGTTAGATCTCATTGAAAAGAAACCTGGTGGAATAGTGGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAATCGACACACGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTCATAAAGCCAAAGCTTTCTCGAACGGATTTCACCATCGCTCATTATGCTGGAGAGGTCTTATATCAATCTGAACAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAATATCAGGATTTGTTGGGTGCCTCCAAATGTTCATTTGTTGCTGGCCTTTTTCCTCCACTAAAAGAAGAATCTGCAAAATCTTCTAAGTTTTCTTCAATTGGGTCTCGCTTTAAGCTACAACTACAACAGTTAATGGAGACATTAAATTCCACAGAGCCTCACTACATCAGATGTGTAAAGCCAAATAACCTCTTAAAACCTGCCATTTTTGAGAATGTTAACATAATGCAACAACTGCGGTGTGGTGGTGTCTTAGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGTGCGTTCTTTGAGTTCATTAATCGATTTGGAATTTTAGCTGAAGAATCTTTGGAAGGAAACTATGATGAAAAAAGTGTGTGCAAAAAGATACTAGAAAAGCAGGGACTTAAAGGGTTTCAGATTGGTAAGACAAAAGTATTCCTTAGAGCTGGTCAGATGGCTGAATTAGATGCTCGGAGAGCTGAGGTGCTGAGTAATGCAGCAAAGACTATTCAACGGCGCACACGAACCCATATCGCTCGCAAACAGTTTATTGCATTACGAAAGGCGACCATACATGTGCAATCTAGGTGGAGAGGAAAACTGGCTTGCAAACATTTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTAGAAGATTTCATGCGAGATCAGCCTATAAGAAACTACAAAGCTCAGTGCTTATTGTGCAAACTGGTTTAAGAGCAATGGCAGCTCGGAATGAATTCCGATTTAGGAAGCAAACAAAGGCGGCAATTATCATTCAGGCTCGATGGCGTTGCCACAAAGCTGCCTCATACTATACAAAACTTCAGAGAGGCTCAATAGTTGCACAATGTAGATGGAGAGGAAAAACTGCAAGAAAGGAACTTAGAAAACTCAAATTGGCTGCAAGGGAGACTGGTGCGCTTAAAGAAGCAAAGGATAAGTTGGAAAAGAAAGTGGAAGAACTTACATGGCGCATACAATTAGAAAAACGTCTAAGGACGGATCTGGAGGAGGCAAAAGCGCAGGAGATAGCGAAGTTCCAAAATATCGTGCAAGAACTGCAGGCGAAAGTTGACGAAACAAACGCGTTGCTTGTAAAGGAGCGAGAGGTCGTGAAGAAGGCTACTGAAGAAGCACCTCCTGTTGTACAAGAAACCCAAGTTCTGGTTGAAGATACTAAGAAAATTGATGCTTTGACAGAAGAAGTAGAAAGCTTAAAGACCTCGCTGGATACGGAGAAGAACAGAGCTGATGAATATGAGAAAAAATATGGTGAAGTAGAACAGTCTAGAGAAGAACAACGCAAAAAGTTAGAAGACACAGAGAAAAAAGCTCATCAGCTCCAGGAATCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGACAACAAGCTGTGTCTATGGCACCTAATAAAATCCTCTCGGGACGGTCTAGATCGATTCTTCAGAGAGGTGCTGAAAGTGGTCATTATGGAGGGGAAGGGAGGACGCCTTTGGATCTTCACAGCCCTTCTATTAACCAAAGGGAATCAGAAGTAGAGGACAAACCTCAAAAATCTCTTAATGAGAAACAGCAAGAGAATCAAGAACTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCAGCCAACAGGCCAATAGCTGCTTGTATCATCTACAAATGCCTGCTTCAATGGAGGTCGTTCGAAGTCGAACGCACCAGTGTATTCGATAGGATAATTCAAACTATTGGCCATGCCATTGAGACCCAGGATAACAACGACGTCTTGGCCTATTGGTTGTCCAACGCTTCAACGCTTCTCTTACTGCTTCAGCGCACTTTGAAAGCAAGTGGCGCTGCTGGAATGGCTCCACAACGTCGCCGATCGTCATCAGCCACGCTATTCGGGAGGATGACTCAAAGTTTTCGAGGAGCTCCACAAGGAGTTAGTCTATCCTTAATCAATGGTGGAACTAGTGGTGGAGTGGACTCGTTACGACAAGTCGAAGCAAAGTACCCTGCTTTGTTGTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATAAGAGACAATCTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCACCAAGAACATCAAGGGCAAGTTTGGTTAAGGGATCTTCTCGTTCAGTTGCCACCACGGAGGCGCAACGTGCCTTAATCGCTCACTGGCAAGGAATTGTGAAGAGCCTCGGGAACTTCTTGAACACCTTAAAAGCAAATCATGTACCTCCATTTTTGGTTCGTAAAGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGTCTTCTATTACGACGAGAGTGTTGTTCGTTTAGCAACGGTGAATACGTCAAAGCTGGACTGTCTGAATTAGAGCATTGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGACGAGCTTAAGCATATACGACAAGCGATCGGGTTTCTGGTTATTCATCAGAAGCCAAAGAAGACGTTAGACGAAATAAGTCACGATCTATGCCCCGTACTAAGCATACAGCAGCTGTATCGTATCAGTACGATGTACTGGGACGACAAGTATGGTACTCATAGTGTTTCCCCTGATGTTATATCCAATATGAGGGTGTTAATGACTGAAGATTCGAACCATGCAATTAGCAATTCATTTCTATTGGACGACGATTCGAGTATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGGAACAAATAGACATCGGAGACATCGAACCACCGCCACTGATTCGGGAGAACTCAGGCTTTAGTTTTTTGTTACCTCGAACAGACTAA 4590 42.0 MGTPVNIIVGSHVWIEDPEVAWLDGLVSKITGQEAEIEASNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMHQYKGAPFGELSPHVFAVADVAYRAMVIEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSNCYELVDVSDAHDYLATRRAMDVVGISAKEQEAIFRVVAAILHLGNIAFTKGKDGDSSVPKDDMAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSEQFLDKNKDYVVPEYQDLLGASKCSFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAEESLEGNYDEKSVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGKLACKHFKNLKREAAAVKIQKNARRFHARSAYKKLQSSVLIVQTGLRAMAARNEFRFRKQTKAAIIIQARWRCHKAASYYTKLQRGSIVAQCRWRGKTARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKFQNIVQELQAKVDETNALLVKEREVVKKATEEAPPVVQETQVLVEDTKKIDALTEEVESLKTSLDTEKNRADEYEKKYGEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKILSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRESEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAANRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVSLSLINGGTSGGVDSLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMEQIDIGDIEPPPLIRENSGFSFLLPRTD 1529
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 8982701 8993939 - CmaCh12G011410.1 Cma12g01141 305631
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01141 1529 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 MobiDBLite consensus disorder prediction 1073 1111 - -
Cma12g01141 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Cma12g01141 1529 CDD MYSc_Myo11 76 720 IPR036018 -
Cma12g01141 1529 Gene3D - 439 623 - -
Cma12g01141 1529 Pfam DIL domain 1348 1451 IPR002710 -
Cma12g01141 1529 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Cma12g01141 1529 Gene3D - 667 730 - -
Cma12g01141 1529 SMART DIL_2 1347 1454 IPR002710 -
Cma12g01141 1529 CDD MyosinXI_CBD 1110 1495 IPR037975 GO:0007015
Cma12g01141 1529 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cma12g01141 1529 PANTHER MYOSIN-9 6 1526 - -
Cma12g01141 1529 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Cma12g01141 1529 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Cma12g01141 1529 Gene3D - 252 310 - -
Cma12g01141 1529 ProSiteProfiles IQ motif profile. 735 762 IPR000048 GO:0005515
Cma12g01141 1529 ProSiteProfiles Dilute domain profile. 1159 1472 IPR002710 -
Cma12g01141 1529 PANTHER MYOSIN 6 1526 - -
Cma12g01141 1529 Pfam IQ calmodulin-binding motif 759 779 IPR000048 GO:0005515
Cma12g01141 1529 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Cma12g01141 1529 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Cma12g01141 1529 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Cma12g01141 1529 SMART iq_5 853 875 IPR000048 GO:0005515
Cma12g01141 1529 SMART iq_5 734 756 IPR000048 GO:0005515
Cma12g01141 1529 SMART iq_5 757 779 IPR000048 GO:0005515
Cma12g01141 1529 SMART iq_5 805 827 IPR000048 GO:0005515
Cma12g01141 1529 SMART iq_5 830 852 IPR000048 GO:0005515
Cma12g01141 1529 SMART iq_5 782 804 IPR000048 GO:0005515
Cma12g01141 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 785 IPR027417 -
Cma12g01141 1529 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cma12g01141 1529 ProSiteProfiles IQ motif profile. 783 810 IPR000048 GO:0005515
Cma12g01141 1529 Coils Coil 968 1051 - -
Cma12g01141 1529 Coils Coil 916 957 - -
Cma12g01141 1529 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
Cma12g01141 1529 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 Coils Coil 877 911 - -
Cma12g01141 1529 Gene3D - 785 832 - -
Cma12g01141 1529 Gene3D - 733 784 - -
Cma12g01141 1529 Gene3D - 833 882 - -
Cma12g01141 1529 MobiDBLite consensus disorder prediction 1094 1110 - -
Cma12g01141 1529 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma12g01141 1529 MobiDBLite consensus disorder prediction 986 1029 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00412 Cma-Chr5:1811143 Cma12g01141 Cma-Chr12:8982701 0 dispersed
Cma08g00051 Cma-Chr8:276033 Cma12g01141 Cma-Chr12:8982701 0 dispersed
Cma08g00269 Cma-Chr8:1546335 Cma12g01141 Cma-Chr12:8982701 0 dispersed
Cma10g00745 Cma-Chr10:3388762 Cma12g01141 Cma-Chr12:8982701 0 dispersed
Cma11g00715 Cma-Chr11:3486196 Cma12g01141 Cma-Chr12:8982701 0 dispersed
Cma12g01141 Cma-Chr12:8982701 Cma17g00917 Cma-Chr17:6904312 0 dispersed
Cma12g01141 Cma-Chr12:8982701 Cma05g01225 Cma-Chr5:9410210 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01141 K10357 - csv:101206606 2873.19