Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g01141 | ATGGGTACACCAGTTAACATTATTGTCGGTTCTCATGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGATTGGTATCCAAGATTACAGGGCAGGAAGCTGAGATCGAAGCCAGCAATGGAAAGAAAGTTGTTGCAAAATTATCCAAAATATATCCCAAAGATATGGAAGCTCCTGCTGGTGGCGTCGATGATATGACGAAGCTATCTTACCTGCACGAGCCAGGAGTTCTACAAAATTTAAAAAGTCGATATGAACTCAACGAAATCTATACATACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCATCAATACAAAGGAGCACCATTTGGAGAGCTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCTTACAGGGCAATGGTTATTGAGGGTAAAAGTAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACTACAAAGATGCTTATGCGGTACCTTGCGTTTTTAGGTGGTAGGGCGGCTACTGAAGGACGAACGGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTCAGAAATAACAATTCCAGTCGCTTTGGTAAATTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCCGAACTTACCTTCTTGAGAGATCTCGTGTTTGCCAAGTTTCCGATCCCGAGCGCAATTATCACTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGGAAATCGAAAAATACAAGCTGGGAAATCCTAAATCATTTCATTATCTTAATCAATCAAATTGCTATGAACTGGTTGATGTAAGTGATGCTCATGACTATCTTGCCACTAGAAGAGCTATGGATGTTGTTGGAATAAGTGCCAAGGAGCAGGAAGCAATTTTTAGAGTTGTTGCTGCAATTCTTCATCTCGGAAACATTGCATTTACGAAGGGCAAAGACGGCGACTCATCAGTTCCAAAAGACGACATGGCCAAGTTTCATCTTAAAATGACTTCGGAGCTTCTCATGTGTGATAATGCTGGCCTTGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTGATCAAACGTAGCCTGGATCCTCAAAGTGCGGCTATTAGTCGGGATGGTTTGGCCAAAACGATATATTCTCGGCTATTCGACTGGCTGGTTGATAAAATCAATGTCTCAATTGGACAAGATCCTAATTCCAAGTCCTTGATTGGGGTTCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACGAAAGAAGAGATCGATTGGAGTTATATTGAGTTCGTTGACAACCAAGATGTGTTAGATCTCATTGAAAAGAAACCTGGTGGAATAGTGGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAATCGACACACGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTCATAAAGCCAAAGCTTTCTCGAACGGATTTCACCATCGCTCATTATGCTGGAGAGGTCTTATATCAATCTGAACAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAATATCAGGATTTGTTGGGTGCCTCCAAATGTTCATTTGTTGCTGGCCTTTTTCCTCCACTAAAAGAAGAATCTGCAAAATCTTCTAAGTTTTCTTCAATTGGGTCTCGCTTTAAGCTACAACTACAACAGTTAATGGAGACATTAAATTCCACAGAGCCTCACTACATCAGATGTGTAAAGCCAAATAACCTCTTAAAACCTGCCATTTTTGAGAATGTTAACATAATGCAACAACTGCGGTGTGGTGGTGTCTTAGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGTGCGTTCTTTGAGTTCATTAATCGATTTGGAATTTTAGCTGAAGAATCTTTGGAAGGAAACTATGATGAAAAAAGTGTGTGCAAAAAGATACTAGAAAAGCAGGGACTTAAAGGGTTTCAGATTGGTAAGACAAAAGTATTCCTTAGAGCTGGTCAGATGGCTGAATTAGATGCTCGGAGAGCTGAGGTGCTGAGTAATGCAGCAAAGACTATTCAACGGCGCACACGAACCCATATCGCTCGCAAACAGTTTATTGCATTACGAAAGGCGACCATACATGTGCAATCTAGGTGGAGAGGAAAACTGGCTTGCAAACATTTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTAGAAGATTTCATGCGAGATCAGCCTATAAGAAACTACAAAGCTCAGTGCTTATTGTGCAAACTGGTTTAAGAGCAATGGCAGCTCGGAATGAATTCCGATTTAGGAAGCAAACAAAGGCGGCAATTATCATTCAGGCTCGATGGCGTTGCCACAAAGCTGCCTCATACTATACAAAACTTCAGAGAGGCTCAATAGTTGCACAATGTAGATGGAGAGGAAAAACTGCAAGAAAGGAACTTAGAAAACTCAAATTGGCTGCAAGGGAGACTGGTGCGCTTAAAGAAGCAAAGGATAAGTTGGAAAAGAAAGTGGAAGAACTTACATGGCGCATACAATTAGAAAAACGTCTAAGGACGGATCTGGAGGAGGCAAAAGCGCAGGAGATAGCGAAGTTCCAAAATATCGTGCAAGAACTGCAGGCGAAAGTTGACGAAACAAACGCGTTGCTTGTAAAGGAGCGAGAGGTCGTGAAGAAGGCTACTGAAGAAGCACCTCCTGTTGTACAAGAAACCCAAGTTCTGGTTGAAGATACTAAGAAAATTGATGCTTTGACAGAAGAAGTAGAAAGCTTAAAGACCTCGCTGGATACGGAGAAGAACAGAGCTGATGAATATGAGAAAAAATATGGTGAAGTAGAACAGTCTAGAGAAGAACAACGCAAAAAGTTAGAAGACACAGAGAAAAAAGCTCATCAGCTCCAGGAATCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGACAACAAGCTGTGTCTATGGCACCTAATAAAATCCTCTCGGGACGGTCTAGATCGATTCTTCAGAGAGGTGCTGAAAGTGGTCATTATGGAGGGGAAGGGAGGACGCCTTTGGATCTTCACAGCCCTTCTATTAACCAAAGGGAATCAGAAGTAGAGGACAAACCTCAAAAATCTCTTAATGAGAAACAGCAAGAGAATCAAGAACTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCAGCCAACAGGCCAATAGCTGCTTGTATCATCTACAAATGCCTGCTTCAATGGAGGTCGTTCGAAGTCGAACGCACCAGTGTATTCGATAGGATAATTCAAACTATTGGCCATGCCATTGAGACCCAGGATAACAACGACGTCTTGGCCTATTGGTTGTCCAACGCTTCAACGCTTCTCTTACTGCTTCAGCGCACTTTGAAAGCAAGTGGCGCTGCTGGAATGGCTCCACAACGTCGCCGATCGTCATCAGCCACGCTATTCGGGAGGATGACTCAAAGTTTTCGAGGAGCTCCACAAGGAGTTAGTCTATCCTTAATCAATGGTGGAACTAGTGGTGGAGTGGACTCGTTACGACAAGTCGAAGCAAAGTACCCTGCTTTGTTGTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATAAGAGACAATCTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCACCAAGAACATCAAGGGCAAGTTTGGTTAAGGGATCTTCTCGTTCAGTTGCCACCACGGAGGCGCAACGTGCCTTAATCGCTCACTGGCAAGGAATTGTGAAGAGCCTCGGGAACTTCTTGAACACCTTAAAAGCAAATCATGTACCTCCATTTTTGGTTCGTAAAGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGTCTTCTATTACGACGAGAGTGTTGTTCGTTTAGCAACGGTGAATACGTCAAAGCTGGACTGTCTGAATTAGAGCATTGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGACGAGCTTAAGCATATACGACAAGCGATCGGGTTTCTGGTTATTCATCAGAAGCCAAAGAAGACGTTAGACGAAATAAGTCACGATCTATGCCCCGTACTAAGCATACAGCAGCTGTATCGTATCAGTACGATGTACTGGGACGACAAGTATGGTACTCATAGTGTTTCCCCTGATGTTATATCCAATATGAGGGTGTTAATGACTGAAGATTCGAACCATGCAATTAGCAATTCATTTCTATTGGACGACGATTCGAGTATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGGAACAAATAGACATCGGAGACATCGAACCACCGCCACTGATTCGGGAGAACTCAGGCTTTAGTTTTTTGTTACCTCGAACAGACTAA | 4590 | 42.0 | MGTPVNIIVGSHVWIEDPEVAWLDGLVSKITGQEAEIEASNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMHQYKGAPFGELSPHVFAVADVAYRAMVIEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSNCYELVDVSDAHDYLATRRAMDVVGISAKEQEAIFRVVAAILHLGNIAFTKGKDGDSSVPKDDMAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSEQFLDKNKDYVVPEYQDLLGASKCSFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAEESLEGNYDEKSVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGKLACKHFKNLKREAAAVKIQKNARRFHARSAYKKLQSSVLIVQTGLRAMAARNEFRFRKQTKAAIIIQARWRCHKAASYYTKLQRGSIVAQCRWRGKTARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKFQNIVQELQAKVDETNALLVKEREVVKKATEEAPPVVQETQVLVEDTKKIDALTEEVESLKTSLDTEKNRADEYEKKYGEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKILSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRESEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAANRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVSLSLINGGTSGGVDSLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMEQIDIGDIEPPPLIRENSGFSFLLPRTD | 1529 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 8982701 | 8993939 | - | CmaCh12G011410.1 | Cma12g01141 | 305631 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g01141 | 1529 | Pfam | Myosin head (motor domain) | 64 | 720 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | Pfam | Myosin N-terminal SH3-like domain | 9 | 51 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | MobiDBLite | consensus disorder prediction | 1073 | 1111 | - | - | |
| Cma12g01141 | 1529 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 785 | 883 | IPR027417 | - | |
| Cma12g01141 | 1529 | CDD | MYSc_Myo11 | 76 | 720 | IPR036018 | - | |
| Cma12g01141 | 1529 | Gene3D | - | 439 | 623 | - | - | |
| Cma12g01141 | 1529 | Pfam | DIL domain | 1348 | 1451 | IPR002710 | - | |
| Cma12g01141 | 1529 | ProSiteProfiles | IQ motif profile. | 854 | 883 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | Gene3D | - | 667 | 730 | - | - | |
| Cma12g01141 | 1529 | SMART | DIL_2 | 1347 | 1454 | IPR002710 | - | |
| Cma12g01141 | 1529 | CDD | MyosinXI_CBD | 1110 | 1495 | IPR037975 | GO:0007015 | |
| Cma12g01141 | 1529 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
| Cma12g01141 | 1529 | PANTHER | MYOSIN-9 | 6 | 1526 | - | - | |
| Cma12g01141 | 1529 | ProSiteProfiles | IQ motif profile. | 758 | 787 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | ProSiteProfiles | Myosin motor domain profile. | 62 | 732 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | ProSiteProfiles | IQ motif profile. | 806 | 835 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | Gene3D | - | 252 | 310 | - | - | |
| Cma12g01141 | 1529 | ProSiteProfiles | IQ motif profile. | 735 | 762 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | ProSiteProfiles | Dilute domain profile. | 1159 | 1472 | IPR002710 | - | |
| Cma12g01141 | 1529 | PANTHER | MYOSIN | 6 | 1526 | - | - | |
| Cma12g01141 | 1529 | Pfam | IQ calmodulin-binding motif | 759 | 779 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | Pfam | IQ calmodulin-binding motif | 832 | 851 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | Pfam | IQ calmodulin-binding motif | 737 | 755 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | Pfam | IQ calmodulin-binding motif | 785 | 804 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | SMART | iq_5 | 853 | 875 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | SMART | iq_5 | 805 | 827 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | SMART | iq_5 | 830 | 852 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 38 | 785 | IPR027417 | - | |
| Cma12g01141 | 1529 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 601 | - | - | |
| Cma12g01141 | 1529 | ProSiteProfiles | IQ motif profile. | 783 | 810 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | Coils | Coil | 968 | 1051 | - | - | |
| Cma12g01141 | 1529 | Coils | Coil | 916 | 957 | - | - | |
| Cma12g01141 | 1529 | ProSiteProfiles | IQ motif profile. | 831 | 858 | IPR000048 | GO:0005515 | |
| Cma12g01141 | 1529 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | Coils | Coil | 877 | 911 | - | - | |
| Cma12g01141 | 1529 | Gene3D | - | 785 | 832 | - | - | |
| Cma12g01141 | 1529 | Gene3D | - | 733 | 784 | - | - | |
| Cma12g01141 | 1529 | Gene3D | - | 833 | 882 | - | - | |
| Cma12g01141 | 1529 | MobiDBLite | consensus disorder prediction | 1094 | 1110 | - | - | |
| Cma12g01141 | 1529 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | SMART | MYSc_2a | 57 | 733 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma12g01141 | 1529 | MobiDBLite | consensus disorder prediction | 986 | 1029 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00412 | Cma-Chr5:1811143 | Cma12g01141 | Cma-Chr12:8982701 | 0 | dispersed | |
| Cma08g00051 | Cma-Chr8:276033 | Cma12g01141 | Cma-Chr12:8982701 | 0 | dispersed | |
| Cma08g00269 | Cma-Chr8:1546335 | Cma12g01141 | Cma-Chr12:8982701 | 0 | dispersed | |
| Cma10g00745 | Cma-Chr10:3388762 | Cma12g01141 | Cma-Chr12:8982701 | 0 | dispersed | |
| Cma11g00715 | Cma-Chr11:3486196 | Cma12g01141 | Cma-Chr12:8982701 | 0 | dispersed | |
| Cma12g01141 | Cma-Chr12:8982701 | Cma17g00917 | Cma-Chr17:6904312 | 0 | dispersed | |
| Cma12g01141 | Cma-Chr12:8982701 | Cma05g01225 | Cma-Chr5:9410210 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g01141 | K10357 | - | csv:101206606 | 2873.19 |