Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01143 ATGGCTAACCGGTGGTGGACCTCCGCCCAGATGGGTCTTTCCGGAGTTGATCATACATCCACAACCTCCTCTGCCTTGAGAAAACCAGATCTCGGAATCTCCATGAACAACAACGGCGGTGGTGGTGGTGGCGATGACGATGACGATAGAGACAACGGTGGCAGTGATGAGCCTAAGGAAGGAGCTGTCGACGTTCCCTCTCGCCGCCCCCGCGGCCGTCCACCCGGGTCCAAGAATAAGCCTAAGCCACCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCGTGGAGATTTCTAATGGTGCTGATATCGTTGAGTGTGTCGCTCAATTCTCCCGTCGGCGTCAGAAAGGTGTGTCTGTGCTTAGTGGTAGTGGGACGGTAACGAACGTGACCCTCCGGCAACCGTCGGCCCCTGGTGCAGTCTTGACACTCCATGGTCGATTCGAGATCCTTTCATTGACCGGAACTTTCCTCCCTGGACCAGCTCCGCCCGGCTCGGCGGGCCTAACGATCTACTTAGCTGGTGGTCAAGGGCAAGTGGTGGGTGGTAGTGTCGTCGGGCCACTCACCGCTGCCGGGCCGGTGATGGTGATAGCTGCGACATTTTCCAATGCAACATACGAGCGATTACCGTTGGAAGAGGAGGAGGACGGCGGAGGAGGAGGAGGAGGAGGACAAGGGCTGGCATCGACCGGAGGTGGTGGTGGAGGGGATAGTTCACCACAAGGCATTGGTAGCGGAGTGGGAGATCCATCAGCTATGCCGCCGTTGTACAATTTACCGCCGAACTTGCTGCCGAATGGTGGCGGTGGGCAGATGAATCAGGAGGCTTATTCTTGGGCTCACGGCTGCCGGCCGCCGTTCTAA 882 57.26 MANRWWTSAQMGLSGVDHTSTTSSALRKPDLGISMNNNGGGGGGDDDDDRDNGGSDEPKEGAVDVPSRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVVEISNGADIVECVAQFSRRRQKGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSAGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEDGGGGGGGGQGLASTGGGGGGDSSPQGIGSGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGCRPPF 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9003109 9004476 + CmaCh12G011430.1 Cma12g01143 305633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01143 293 MobiDBLite consensus disorder prediction 43 67 - -
Cma12g01143 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 220 - -
Cma12g01143 293 MobiDBLite consensus disorder prediction 1 31 - -
Cma12g01143 293 PIRSF ESCAROLA 10 293 IPR014476 GO:0003680
Cma12g01143 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 209 IPR005175 -
Cma12g01143 293 Gene3D - 96 222 - -
Cma12g01143 293 MobiDBLite consensus disorder prediction 1 92 - -
Cma12g01143 293 MobiDBLite consensus disorder prediction 218 277 - -
Cma12g01143 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 293 IPR014476 GO:0003680
Cma12g01143 293 CDD DUF296 96 179 IPR005175 -
Cma12g01143 293 ProSiteProfiles PPC domain profile profile. 92 230 IPR005175 -
Cma12g01143 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 7 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01339 Cma-Chr6:8796348 Cma12g01143 Cma-Chr12:9003109 1.73E-76 dispersed
Cma12g01143 Cma-Chr12:9003109 Cma14g01795 Cma-Chr14:12942583 1.72E-80 dispersed
Cma12g01143 Cma-Chr12:9003109 Cma05g01227 Cma-Chr5:9430823 2.10E-130 wgd
Cma12g01143 Cma-Chr12:9003109 Cma08g01097 Cma-Chr8:6829001 2.83E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01143 - - cpep:111799159 439.113