Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01153 ATGAGACTCACCAACTCCCTCCCCGATCGCCATAGCAACCGCCGCAACCGGCCGCCAGAGACCGATACCTCTCAACATCACCACCACCAAAACCACCTTCAAACCTCTCATCTCCATCTCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCTTCCCTGGGAACTCCCTACCGGTCTTCCAAATCCACACTCAAACCTCCCTCCTCAGCCACCGCCACTCTCGCAAAATCCCGACAATGCCGCTTTTCAGATCGGCGACACCACTCCAGCCGCCAAAATAGCCATGGCCATGCTTCACCAGCAGTTACTCACCACCGCGGCAGATTCCAGTCTCCTTACATTGCCTGGAAACGACGTCGTTGAAGTCGAAGGCTCTCCGTCCTTCAAATGCCCTAATCCGATTATTGCCGACGGTTCCGTCAATCCGTCTCTCTTCAACGAATTCACCGGATTCCTCAACGCCTCCGGCTCCAGCCATAGCCATAACCTGAATCAATCTCAGGGAAATTCAACTTCAACTTCACAGAAACAGAGCTTCGGAGCTCCAGTATCAGCCAATACTCCACCTCCGGTAGGGACTGGTTCCGGCGGTGGTGCTAGCGCAGCGGCGCAGCCGCGACAGAGAGTCAGAGCTCGGCGAGGTCAAGCCACGGATCCTCACAGTATTGCGGAAAGATTACGGAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTACAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCGTCAATGCTGGATGAGATCATAGACTACGTGAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTATGAGCAGGCTGGGCGGCGCCACTGCCTCCATGCCGTCCCAGCTTGTTGCCGACATGTCCTCCCACTCTGAGGGTGAGATTGACGGTAACCAGTCCAACGGAACCGGAGGAGCTGCCGGACAGGCGTTCGCCGGAGCTCCGGCATTTAATGAAACGATGGCGGTGACAGAGCATCAGGTGGTGAAGTTAATGGAGAAAGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGTCTCATGCCCATCTCTCTAGCCACCGCTATCTCCACCGCCACATGTCACAACCGCCCTGTTACAGCCTCCAGAGGCGGCGGAGATCGCCCCACCTCAGCCAGCCTGTCGGCGTTGACCGTTCAGTCAACCACCTTGGGTAACGGCACCGTCAAAGATAAGGCCTCTATTTCTCGGCCGTGA 1260 55.56 MRLTNSLPDRHSNRRNRPPETDTSQHHHHQNHLQTSHLHLSSFSSDDFLDQILSSIPLPWELPTGLPNPHSNLPPQPPPLSQNPDNAAFQIGDTTPAAKIAMAMLHQQLLTTAADSSLLTLPGNDVVEVEGSPSFKCPNPIIADGSVNPSLFNEFTGFLNASGSSHSHNLNQSQGNSTSTSQKQSFGAPVSANTPPPVGTGSGGGASAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATASMPSQLVADMSSHSEGEIDGNQSNGTGGAAGQAFAGAPAFNETMAVTEHQVVKLMEKDMGSAMQYLQGKGLCLMPISLATAISTATCHNRPVTASRGGGDRPTSASLSALTVQSTTLGNGTVKDKASISRP 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9092596 9096307 - CmaCh12G011530.1 Cma12g01153 305643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01153 419 PANTHER TRANSCRIPTION FACTOR BHLH69 40 383 - -
Cma12g01153 419 Gene3D - 217 279 IPR036638 GO:0046983
Cma12g01153 419 SMART finulus 228 277 IPR011598 GO:0046983
Cma12g01153 419 MobiDBLite consensus disorder prediction 1 37 - -
Cma12g01153 419 MobiDBLite consensus disorder prediction 299 318 - -
Cma12g01153 419 MobiDBLite consensus disorder prediction 66 82 - -
Cma12g01153 419 Pfam Helix-loop-helix DNA-binding domain 227 272 IPR011598 GO:0046983
Cma12g01153 419 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 383 - -
Cma12g01153 419 MobiDBLite consensus disorder prediction 163 227 - -
Cma12g01153 419 MobiDBLite consensus disorder prediction 299 317 - -
Cma12g01153 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Cma12g01153 419 MobiDBLite consensus disorder prediction 163 200 - -
Cma12g01153 419 MobiDBLite consensus disorder prediction 7 29 - -
Cma12g01153 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 281 IPR036638 GO:0046983
Cma12g01153 419 MobiDBLite consensus disorder prediction 66 85 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00473 Cma12g01153 CCT
Cma10g00480 Cma12g01153 CCT
Cma05g01236 Cma12g01153 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01806 Cma-Chr2:10045686 Cma12g01153 Cma-Chr12:9092596 2.76E-22 dispersed
Cma10g00480 Cma-Chr10:2188836 Cma12g01153 Cma-Chr12:9092596 5.83E-101 dispersed
Cma11g00473 Cma-Chr11:2294679 Cma12g01153 Cma-Chr12:9092596 3.91E-92 dispersed
Cma11g00990 Cma-Chr11:5277672 Cma12g01153 Cma-Chr12:9092596 2.01E-57 dispersed
Cma12g01153 Cma-Chr12:9092596 Cma17g01213 Cma-Chr17:8381348 3.47E-47 dispersed
Cma12g01153 Cma-Chr12:9092596 Cma05g01236 Cma-Chr5:9494722 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36042 PF00010 HLH 1.60E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01153 - - csv:101222794 463.381