Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01153 | ATGAGACTCACCAACTCCCTCCCCGATCGCCATAGCAACCGCCGCAACCGGCCGCCAGAGACCGATACCTCTCAACATCACCACCACCAAAACCACCTTCAAACCTCTCATCTCCATCTCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCTTCCCTGGGAACTCCCTACCGGTCTTCCAAATCCACACTCAAACCTCCCTCCTCAGCCACCGCCACTCTCGCAAAATCCCGACAATGCCGCTTTTCAGATCGGCGACACCACTCCAGCCGCCAAAATAGCCATGGCCATGCTTCACCAGCAGTTACTCACCACCGCGGCAGATTCCAGTCTCCTTACATTGCCTGGAAACGACGTCGTTGAAGTCGAAGGCTCTCCGTCCTTCAAATGCCCTAATCCGATTATTGCCGACGGTTCCGTCAATCCGTCTCTCTTCAACGAATTCACCGGATTCCTCAACGCCTCCGGCTCCAGCCATAGCCATAACCTGAATCAATCTCAGGGAAATTCAACTTCAACTTCACAGAAACAGAGCTTCGGAGCTCCAGTATCAGCCAATACTCCACCTCCGGTAGGGACTGGTTCCGGCGGTGGTGCTAGCGCAGCGGCGCAGCCGCGACAGAGAGTCAGAGCTCGGCGAGGTCAAGCCACGGATCCTCACAGTATTGCGGAAAGATTACGGAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTACAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCGTCAATGCTGGATGAGATCATAGACTACGTGAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTATGAGCAGGCTGGGCGGCGCCACTGCCTCCATGCCGTCCCAGCTTGTTGCCGACATGTCCTCCCACTCTGAGGGTGAGATTGACGGTAACCAGTCCAACGGAACCGGAGGAGCTGCCGGACAGGCGTTCGCCGGAGCTCCGGCATTTAATGAAACGATGGCGGTGACAGAGCATCAGGTGGTGAAGTTAATGGAGAAAGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGTCTCATGCCCATCTCTCTAGCCACCGCTATCTCCACCGCCACATGTCACAACCGCCCTGTTACAGCCTCCAGAGGCGGCGGAGATCGCCCCACCTCAGCCAGCCTGTCGGCGTTGACCGTTCAGTCAACCACCTTGGGTAACGGCACCGTCAAAGATAAGGCCTCTATTTCTCGGCCGTGA | 1260 | 55.56 | MRLTNSLPDRHSNRRNRPPETDTSQHHHHQNHLQTSHLHLSSFSSDDFLDQILSSIPLPWELPTGLPNPHSNLPPQPPPLSQNPDNAAFQIGDTTPAAKIAMAMLHQQLLTTAADSSLLTLPGNDVVEVEGSPSFKCPNPIIADGSVNPSLFNEFTGFLNASGSSHSHNLNQSQGNSTSTSQKQSFGAPVSANTPPPVGTGSGGGASAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATASMPSQLVADMSSHSEGEIDGNQSNGTGGAAGQAFAGAPAFNETMAVTEHQVVKLMEKDMGSAMQYLQGKGLCLMPISLATAISTATCHNRPVTASRGGGDRPTSASLSALTVQSTTLGNGTVKDKASISRP | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9092596 | 9096307 | - | CmaCh12G011530.1 | Cma12g01153 | 305643 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01153 | 419 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 40 | 383 | - | - | |
Cma12g01153 | 419 | Gene3D | - | 217 | 279 | IPR036638 | GO:0046983 | |
Cma12g01153 | 419 | SMART | finulus | 228 | 277 | IPR011598 | GO:0046983 | |
Cma12g01153 | 419 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cma12g01153 | 419 | MobiDBLite | consensus disorder prediction | 299 | 318 | - | - | |
Cma12g01153 | 419 | MobiDBLite | consensus disorder prediction | 66 | 82 | - | - | |
Cma12g01153 | 419 | Pfam | Helix-loop-helix DNA-binding domain | 227 | 272 | IPR011598 | GO:0046983 | |
Cma12g01153 | 419 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 40 | 383 | - | - | |
Cma12g01153 | 419 | MobiDBLite | consensus disorder prediction | 163 | 227 | - | - | |
Cma12g01153 | 419 | MobiDBLite | consensus disorder prediction | 299 | 317 | - | - | |
Cma12g01153 | 419 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 222 | 271 | IPR011598 | GO:0046983 | |
Cma12g01153 | 419 | MobiDBLite | consensus disorder prediction | 163 | 200 | - | - | |
Cma12g01153 | 419 | MobiDBLite | consensus disorder prediction | 7 | 29 | - | - | |
Cma12g01153 | 419 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 220 | 281 | IPR036638 | GO:0046983 | |
Cma12g01153 | 419 | MobiDBLite | consensus disorder prediction | 66 | 85 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00473 | Cma12g01153 | CCT | |
Cma10g00480 | Cma12g01153 | CCT | |
Cma05g01236 | Cma12g01153 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01806 | Cma-Chr2:10045686 | Cma12g01153 | Cma-Chr12:9092596 | 2.76E-22 | dispersed | |
Cma10g00480 | Cma-Chr10:2188836 | Cma12g01153 | Cma-Chr12:9092596 | 5.83E-101 | dispersed | |
Cma11g00473 | Cma-Chr11:2294679 | Cma12g01153 | Cma-Chr12:9092596 | 3.91E-92 | dispersed | |
Cma11g00990 | Cma-Chr11:5277672 | Cma12g01153 | Cma-Chr12:9092596 | 2.01E-57 | dispersed | |
Cma12g01153 | Cma-Chr12:9092596 | Cma17g01213 | Cma-Chr17:8381348 | 3.47E-47 | dispersed | |
Cma12g01153 | Cma-Chr12:9092596 | Cma05g01236 | Cma-Chr5:9494722 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36042 | PF00010 | HLH | 1.60E-09 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01153 | - | - | csv:101222794 | 463.381 |