Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01154 ATGGCGGGTAATGGAGTTTTTGCAGAGATTCTCGACGGTGAAGTTTACAAATACTATTCCGAAGGTGAGTGGAAGAAATCCTCCTCCGGGAAGAGCGTCGCCATTATCAACCCCACTTCGAGGAAGACGCAGTACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATCAAGTGATGGAAATAGCCAAAACTGCTCAGAAATCATGGGCTAAGACTCCATTGTGGAAGAGAGCTGAGCTTCTTCATAAAGCAGCTGCAATTTTGAAAGAACATAAAGCACCCATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCTAAAGATGCAGTGACTGAGGTTGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGCTCTTGGGAGAAGGGAAGTTCTTGGTTTCTGATAGTTTTCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCACTTGGTGTGATCTTAGCCATTCCTCCATTTAACTATCCTGTCAATCTGGCTGTCTCGAAAATTGCACCGGCTTTGATTGCTGGAAATTCGATCGTCCTCAAGCCTCCAACTCAGGGTGCTGTTTCCGCTCTTCATATGGTGCATTGCTTCCATCTTGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACTGGTAAAGGTTCTGAGATTGGTGATTTCCTCACGATGCATCCCGGTGTAGACTGTATAAGCTTTACTGGTGGAGATACTGGTATTGCGATTTCAAAGAAGGCAGGCATGATACCTCTTCAAATGGAACTAGGAGGCAAAGACGCCTGCATTGTTCTCGAGGATGCAGATCTCGATTTAGTCGCTGCAAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGCACCGCCGTCAAGGTTGTTTTGGTAATGGAGTCCGTAGCAGATGCTTTGGTTGAGAAAGTAAATGCCCGGGTGGCTAAACTAACTGTCGGTGCCCCGGAAGACGACTCAGACATTACTCCAGTCGTGACCGAGTCGTCGGCAAATTTCATCGAAGGGTTGGTATTGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAAGGCAACCTGATATGGCCCTTGTTATTAGATAATATTAGACCTGATATGAGGATTGCATGGGAAGAACCCTTTGGACCAGTTTTACCGGTCATAAGAATCAGCTCCATTGAAGAAGGAATCCACCATTGCAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAAGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAAACCGGGACAGTTCAAATCAACTCTGCGCCCGCTCGAGGACCCGATCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGCTCTCAAGGAGTGACCAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTGATCAACTTGCCAACGCCTTCCTACACCATGGGAACCAAGTCTGTTAGTATGAGAGCCATAGGGTCCAAATTGTGA 1530 45.82 MAGNGVFAEILDGEVYKYYSEGEWKKSSSGKSVAIINPTSRKTQYRVQACNQEEVNQVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRLLGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGAPEDDSDITPVVTESSANFIEGLVLDAKEKGATFCQEYRREGNLIWPLLLDNIRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMGTKSVSMRAIGSKL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9099711 9103856 - CmaCh12G011540.1 Cma12g01154 305644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01154 509 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
Cma12g01154 509 CDD ALDH_F11_NP-GAPDH 15 487 - -
Cma12g01154 509 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Cma12g01154 509 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 496 - -
Cma12g01154 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Cma12g01154 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Cma12g01154 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Cma12g01154 509 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Cma12g01154 509 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01154 Cma-Chr12:9099711 Cma20g00289 Cma-Chr20:1399262 1.12E-53 dispersed
Cma12g01154 Cma-Chr12:9099711 Cma02g00667 Cma-Chr2:4051800 2.39E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01154 K00131 - csv:101208699 952.584