Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01161 ATGTGTGTGACGGATTCCGAGCCGGTTGGGGCTGAGAGGGCGCCTTCTGGGAGTACTAATACCAAGCCATGGCGCATGCATTGTGAGTTTTTGGAGACCCAGATGGGGAATCCTGATCAGGAGCTTGATCTTGGTGGAACCAGCGACCTAACCCGTTCTGGGAATTCTTTTCCTCTCGAGAGCATTTCCGAGGACGCTGCAGTGGTAGACAGGAAAGAGAGCCCATCTACTTTTGTTCCTGCGCTTAGATCGGGAGAATGGTCCGATATCGGAAAGCGTCCGTATATGGAGGACACTCATGTATGCATTCAGGACATGGGTAAGAAGTTCGGGTGTAGCTTTGTCAACGAGGAAGCGGTCTCCTTCTATGGTGTATTCGATGGTCACGGAGGAAAAGGCGCTGCACAATTCGTTCGTGACCACTTACCAAGAGTCATCATCGAAGATTCCGACTTTCCTTTAGCGCTTGAAAAAGTGGTCACGAGGTCGTTTATGGAGACCGATGCAGCTTTCGCTAGATCTTGCACTCTCGAAACATCTCTATCTTCAGGCACAACTGCACTGACTGCAATGATATTCGGAAGATCTTTGCTTGTAGCAAACGCTGGCGATTGCCGAGCAGTGTTATCAAGACAAGGGTGTGCAATAGAAATGTCTAAAGACCACAGACCATGCTGCACAAAAGAACGCAAGAGAATCGAGGCCTTGGGCGGATTCATCGACGACGATTACCTAAACGGACTACTTGGGGTCACTCGTGCGTTAGGAGACTGGCATCTTGAAGGAATGAAGGAAATGAGCGAGAGAGGTGGACCGTTAAGCGCCGAACCCGAACTTAAACTAATAACATTGACGAAGGAGGAGGAGTTTTTGATCATAGGGAGCGATGGAATATGGGACGTGTTCACAAGTCAAAACGCTATCGACTTTGCTCGTCGGAGGCTCCAAGAACACAACGACGTGAAGCTTTGCTGCAAGGAAATAGTAGAAGAAGCCATAAAGAGAGGAGCCACGGACAACTTAACAGTGGTGTTGGTTAGCTTTCATTTGGAGCCACCTGAGCCTGTGGTGTTTCAGAGGCCAAGATTTAGACGAAGCATTTCAGCTGAAGGGCTTCAGAACCTGAAATTTCTGCTAGAAGGATAG 1146 48.87 MCVTDSEPVGAERAPSGSTNTKPWRMHCEFLETQMGNPDQELDLGGTSDLTRSGNSFPLESISEDAAVVDRKESPSTFVPALRSGEWSDIGKRPYMEDTHVCIQDMGKKFGCSFVNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIIEDSDFPLALEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAIEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLITLTKEEEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKLCCKEIVEEAIKRGATDNLTVVLVSFHLEPPEPVVFQRPRFRRSISAEGLQNLKFLLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9161099 9166642 + CmaCh12G011610.1 Cma12g01161 305651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01161 381 Gene3D - 65 351 IPR036457 -
Cma12g01161 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Cma12g01161 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Cma12g01161 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Cma12g01161 381 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 369 - -
Cma12g01161 381 PANTHER PROTEIN PHOSPHATASE 2C 1 369 IPR015655 GO:0004722|GO:0006470
Cma12g01161 381 SMART PP2C_4 73 346 IPR001932 -
Cma12g01161 381 SUPERFAMILY PP2C-like 72 349 IPR036457 -
Cma12g01161 381 CDD PP2Cc 83 348 IPR001932 -
Cma12g01161 381 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00041 Cma-Chr9:172537 Cma12g01161 Cma-Chr12:9161099 3.62E-109 dispersed
Cma12g01161 Cma-Chr12:9161099 Cma17g01008 Cma-Chr17:7344665 5.51E-75 dispersed
Cma16g00037 Cma-Chr16:166272 Cma12g01161 Cma-Chr12:9161099 2.06E-33 dispersed
Cma12g01161 Cma-Chr12:9161099 Cma05g01243 Cma-Chr5:9542146 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36044 PF00481 PP2C 1.80E-67 CL0238 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01161 K14803 - csv:101210349 679.478