Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01169 ATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGCGATCAAGCGCAGTCCCTCGGCGACGGAACCGGCTTCGGCCGCAGCGGAGTTGTCGACGAGAAGGCCACTCATCACTCGGTCCTTCGCAAATTCAAGGAGTTCATCCGTGGATTTGAAGTGGAAAAGAATGTTTTCCCCTACAGAGAGAGCCTTCTCCACAACCCGAAATTTCTTCGCGTTGATATGGAGGACGTTCACGCTTTTGACTCCGATCTTCCGGCCAAGCTTCGATCTGCTCCTGCCGATTTCTTGCCATTGTTTGAGACTGCTGCAGCGGAGGTTTTAATGAATCTGAAGACGAAGGTGGCTGGTGAAACTGGAGAAATGGTGGAGCCCGTGGCTGGGGATGTTCAAATTCTGCTAACGTCAAAGGAGGATCCGGTCTCGATGCGGTCACTTGGGGCTCAATACATTTCAAAACTTATTAAAATATCTGGAATCACTATAGCTGCGTCAAGGACCAAGGCAAAGGCAACGTATGTGACCTTATTGTGCAAAAACTGTAGAAGTACACTAAGAGTACCGTGTCGGCCAGGACTTGGAGGGGCAATTGTCCCTCGATCATGTAACCATATGCCCCAGGCTGGAGAAGAACCATGCCCACTAGATCCTTGGATTGTGGTTCCTGATAAGAGCATGTATGTTGATCAACAGACTTTAAAGCTGCAGGAAAACCCAGAAGATGTCCCAACTGGAGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGCCATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTTTCAAGCTGCCAATTCTGCCGCATCCCACAAAGGAGCAGTTGCAATCAGGCAGCCCTATATCAGGGTTGTAGGCATTGAAGAAACTAATGAAGCTAACTCTCGTGGCCCTGCATCTTTCACAACAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAGCCATTTGTTCAAAGATTGCCCCCTCTATATTTGGTCATGAAGATGTGAAGAAGGCAGTGGCTTGTCTTCTATTTGGAGGATCTAGGAAGAATTTGCCTGATGGGGTTAAGTTAAGAGGTGACATTAATGTATTACTCTTGGGGGACCCATCTACTGCTAAATCCCAGTTTCTCAAGTTTGTTGAGAAGACAGCTCCAATTGCTGTTTATACTTCTGGAAAAGGTTCATCGGCTGCTGGACTTACAGCTTCAGTGATACGGGACAGCAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCAGATGGAGGTGTTGTCTGTATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAGACAATATCCATTGCCAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCAGCTGCTAATCCTCCGTCAGGACGTTATGATGATCTTAAGACGGCACAGGATAACATTGATTTGCAAACGACAATTCTCTCCAGATTTGATTTAATTTTCATCGTAAAAGATATAAGGATGTACAGTCAAGATAAGATTATAGCAAGCCACATTATAAAAGTTCATGCATCTGCTGATGCCAATTTGGGTGAAAATAGAGCTTCTAAAGAAGAGAATTGGCTAAAGAGGTATCTTCAATATTGCCGATCTCATTGTCATCCCCGTTTGTCAGAATCTGCGTCCACAATGCTGCAGAATAATTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAATGAAACAGGGGAGGCTGCTGCAATTCCGATCACAGTTAGGCAGCTGGAAGCTATAGTCAGATTAAGCGAGGCACTTGCAAAAATGAAGTTGTCCCATGTTGCCACTGAAGAAAATGTGCAGGAAGCTATTAGACTTTTTACTGTGTCCACGATGGATGCAGCACGCTCTGGGATTCATCAGCAAGTAAATCTAACTCCTGAAATGGCTAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGTAACCACATATCTGAGAGAAGACTGATTGATGAGCTCACCAAAATGGGGATGAACGAGTCAATTGTGAGAAGAGCCCTGATTATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAGAGGCGTGTCATTTTCCGCAAGGCATGA 2208 44.2 MSGWDEGGIYYSDQAQSLGDGTGFGRSGVVDEKATHHSVLRKFKEFIRGFEVEKNVFPYRESLLHNPKFLRVDMEDVHAFDSDLPAKLRSAPADFLPLFETAAAEVLMNLKTKVAGETGEMVEPVAGDVQILLTSKEDPVSMRSLGAQYISKLIKISGITIAASRTKAKATYVTLLCKNCRSTLRVPCRPGLGGAIVPRSCNHMPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQAANSAASHKGAVAIRQPYIRVVGIEETNEANSRGPASFTTEDIEEFKKFAAEPDVYKAICSKIAPSIFGHEDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADANLGENRASKEENWLKRYLQYCRSHCHPRLSESASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEMANEIKQAETQIKRRIGIGNHISERRLIDELTKMGMNESIVRRALIIMHQRDEVEYKRERRVIFRKA 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9219512 9225278 + CmaCh12G011690.1 Cma12g01169 305659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01169 735 Pfam MCM N-terminal domain 41 112 IPR027925 -
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 374 389 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 448 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 462 475 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 486 498 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 513 521 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 SMART mcm 138 652 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 CDD MCM5 337 650 - -
Cma12g01169 735 Pfam MCM P-loop domain 320 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 Gene3D - 30 122 - -
Cma12g01169 735 SUPERFAMILY Nucleic acid-binding proteins 42 299 IPR012340 -
Cma12g01169 735 Gene3D - 142 277 IPR012340 -
Cma12g01169 735 ProSiteProfiles MCM family domain profile. 333 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 63 681 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma12g01169 735 Gene3D - 169 227 - -
Cma12g01169 735 Pfam MCM AAA-lid domain 561 650 IPR041562 -
Cma12g01169 735 Pfam MCM OB domain 142 277 IPR033762 -
Cma12g01169 735 Gene3D - 314 670 IPR027417 -
Cma12g01169 735 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 63 681 - -
Cma12g01169 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 651 IPR027417 -
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 143 158 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 169 181 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 293 305 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 569 584 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma12g01169 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 645 662 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma12g01169 735 ProSitePatterns MCM family signature. 442 450 IPR018525 GO:0003677|GO:0005524|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01169 Cma-Chr12:9219512 Cma14g01060 Cma-Chr14:5671365 4.09E-105 dispersed
Cma12g01169 Cma-Chr12:9219512 Cma06g01755 Cma-Chr6:10703085 5.92E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01169 K02209 - csv:101211822 1383.62