Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01170 ATGGGTTTCATTTTTGAAAAAAAAAAATCAAAACTTGTGGATGAACATCAACAAAGATCATCAAAAAAATGTAAATTTCGTACACACAAACACCAAAATCTCCTCATGGTATCAAAACCCTTCATTAGTGCTCTCTTGTTCTTCACGTTCTTACAAGCTTCCAAAGCTCAGCCATGGATCAAAGCTGGGTATTGGCTATCAGCAGCTGGTTCCCCTTCATCCGACATAAACTCACCTCTGTTCACTCATCTTTTATGTGGGTTTGCAGAGCTCATAAACTCCACTTCTTATGAGCTTCATTTTTCATCCTCTGAGCTTCAAAATTTCTCTAACTTCACAGCAATTGTCAAGCAAAAAAACCCTTCTCTTTCCACTCTTCTCTCCATTGGCGGCGGAAATGCAGATTATCATGTTCTATCCTCAATGGTTAGCAATTTCACTCATAGAAAGGCCTTCATTGATTCCACCATTAAACTTGCAAGAACCCATGATTTTGATGGGCTTGATTTTTGTTGGGTTTCATCCAACACGACATCCGACATGTCCAACATGGGGAAACTCTTTGAAGAATGGCGACAAGCAGCTGAAACAGAGGCCAGAATCTCAAAAAGGCAAGTGCTTATTTTGACAGCAGCTGTTCAAAACACTCCAGATTTGGAATTTGGGTCATATCCTGTTGATTCCATAAGAAATAACTTGAATTGGGTTAATTTTTTGGGTTATGATTATTACATGCCAAGTTTTTGGCCAAATTTTACAGCTCCTTTTGCAGCTTTGTATGATCCATTATTGAATAAAACAAACACAGACAGTGGAATTAGTCAGTGGATTGCAAAGGGATTGCCTGCTGCTAATATTGTTTTGGCTTTGCCCTTTTATGGCTATGCTTGGACACTAAAAAATGTTGAGGATTTTGGTGTTGGAGCAGCTGCCATTGGGCCAGCCATTTCTGCTGATGGGTCGATTACATACAAGGATATAAAGGATTATATGAAGAGCAACAGGGTTGATAATGTGGAGTTTAATGGTAGCTATGTGATGAGTTTTTGTGTGGTTGGATCTACTTGGATTGGGTTTGATGATGCTAAGGTTGTTAAAATTAAGGTTAATTATGTCAAACAAAGGAGGTTGCTTGGTTACTTTGTTTGGTTGGTGTCTAATGATGACAATTGGGAGCTCTCTTCTATTGCAGCTAGCGAGTTTGGGAATGAGAAAGAAAACAAAGTATCTTTGTTGATAGTTATCCCAACCACAATTGGTGGTGCCATTGTTCTTCTCTTACTAGGGTTCTTGTTGTTTAGAAGACTCAAATCCAACAAATCCAAAGATGCAGGAAGAAGATCAAAATTCAATATAAAAAATCTTGTTGGAGGAGAAGATTTTAAGAACAGTGCTCCTGATTTGCAAGTGTTTAGCTATGCTGAGATTGAGAGAGCTACCAACAAATTTGCTTTCATGAATAAACTTGGACAAGGTGGCTATGGCCCCGTTTATAAGGGAGTATTAGGAAATGGACAGGAAATAGCAGTGAAAAGACTGTCAGCAACTTCAGCACAAGGTTTTGAAGAGTTCAAGAATGAAGTTTTGCTCACTGCAAGACTACAGCATGTCAACCTTGTGAAAGTTGTTGGATTCTGTGTTGACACTCAAGAACATATGTTGATTTATGAGTACATGCCTAACAAAAGCCTCGATTTCCATCTCTTCGGCCATGGAAGAGGAAATTTGTTGAATTGGGCAAAAAGAGTAGAGATCATTGAAGGGGTAACTCAAGGACTTCTTTACCTGCAAGAATACTCAAGATTGACAATAATTCATAGGGACTTAAAGCCGAGTAATATTTTGTTGGACGATGGCATGAAGCCGAAAATTTCAGATTTTGGCATGGCTAGAATCTTCGCGAAAGAAGAACTTGAAGCAAACACGAGCCGAATTGCGGGAACATATGGCTATATTCCCCCTGAATATGCGAAGCAAGGAGTTTATTCTACGAAATCAGATGTATTTAGTTTTGGAGTTCTTCTTCTTCAAATCATAAGTGGGAAGAGGACTACCGAGCTAAATGGGGAGCACGAACGTTTGAGTCTTCTAGATTACGCATATGAGGCTTGGAAAGAGGGCAGAGGAATGGAGTTTATGGATCAATCACTTGATGATTCTGAATCAACTTGCAAACTAACAAGATGCATGCAGATAGCTTTGCTTTGTGTTCAAGAAAATGCAGATGATAGGCCAACCATGTTGGAAATCTCTTCAATGCTTAAGAGTTCAACTTCAGAGCTTAAAGATCCACAAAGGCCTGCTTTCTCTGTCAAAAAAGTTCGTGATGAAACCGATCGTAGCCTTACGATCGATCGACAAACTTACTCTGTTTCTAGTGAAATAGTTACGGAAGTTGCAGCTCGATGA 2409 39.23 MGFIFEKKKSKLVDEHQQRSSKKCKFRTHKHQNLLMVSKPFISALLFFTFLQASKAQPWIKAGYWLSAAGSPSSDINSPLFTHLLCGFAELINSTSYELHFSSSELQNFSNFTAIVKQKNPSLSTLLSIGGGNADYHVLSSMVSNFTHRKAFIDSTIKLARTHDFDGLDFCWVSSNTTSDMSNMGKLFEEWRQAAETEARISKRQVLILTAAVQNTPDLEFGSYPVDSIRNNLNWVNFLGYDYYMPSFWPNFTAPFAALYDPLLNKTNTDSGISQWIAKGLPAANIVLALPFYGYAWTLKNVEDFGVGAAAIGPAISADGSITYKDIKDYMKSNRVDNVEFNGSYVMSFCVVGSTWIGFDDAKVVKIKVNYVKQRRLLGYFVWLVSNDDNWELSSIAASEFGNEKENKVSLLIVIPTTIGGAIVLLLLGFLLFRRLKSNKSKDAGRRSKFNIKNLVGGEDFKNSAPDLQVFSYAEIERATNKFAFMNKLGQGGYGPVYKGVLGNGQEIAVKRLSATSAQGFEEFKNEVLLTARLQHVNLVKVVGFCVDTQEHMLIYEYMPNKSLDFHLFGHGRGNLLNWAKRVEIIEGVTQGLLYLQEYSRLTIIHRDLKPSNILLDDGMKPKISDFGMARIFAKEELEANTSRIAGTYGYIPPEYAKQGVYSTKSDVFSFGVLLLQIISGKRTTELNGEHERLSLLDYAYEAWKEGRGMEFMDQSLDDSESTCKLTRCMQIALLCVQENADDRPTMLEISSMLKSSTSELKDPQRPAFSVKKVRDETDRSLTIDRQTYSVSSEIVTEVAAR 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9225475 9232536 - CmaCh12G011700.1 Cma12g01170 305660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01170 802 Pfam Protein tyrosine and serine/threonine kinase 485 754 IPR001245 GO:0004672|GO:0006468
Cma12g01170 802 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 53 792 - -
Cma12g01170 802 SMART serkin_6 483 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01170 802 SMART 2g34 59 388 IPR011583 GO:0008061
Cma12g01170 802 SUPERFAMILY (Trans)glycosidases 60 406 IPR017853 -
Cma12g01170 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Cma12g01170 802 CDD GH18_plant_chitinase_class_V 57 394 - -
Cma12g01170 802 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 19 53 792 - -
Cma12g01170 802 Pfam Glycosyl hydrolases family 18 62 388 IPR001223 GO:0005975
Cma12g01170 802 ProSiteProfiles Protein kinase domain profile. 483 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01170 802 Gene3D Transferase(Phosphotransferase) domain 1 559 777 - -
Cma12g01170 802 SUPERFAMILY Protein kinase-like (PK-like) 465 778 IPR011009 -
Cma12g01170 802 Gene3D Phosphorylase Kinase; domain 1 458 558 - -
Cma12g01170 802 CDD STKc_IRAK 489 755 - -
Cma12g01170 802 Gene3D Glycosidases 74 390 - -
Cma12g01170 802 SUPERFAMILY Chitinase insertion domain 293 359 IPR029070 -
Cma12g01170 802 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 59 404 IPR001223 GO:0005975
Cma12g01170 802 Gene3D - 292 359 IPR029070 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01170 Cma-Chr12:9225475 Cma13g00695 Cma-Chr13:6328597 2.87E-112 dispersed
Cma11g00481 Cma-Chr11:2333248 Cma12g01170 Cma-Chr12:9225475 4.18E-82 wgd
Cma12g01170 Cma-Chr12:9225475 Cma05g01250 Cma-Chr5:9601674 9.48E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68979 PF00704 Glyco_hydro_18 9.20E-63 CL0058 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01170 - - cmax:111465441 1525.76