Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01184 ATGGATGCCGCCAACCCCAGCAATGGCGATGAGGAATCCATTATCACTCCCTTGCTTGCTCCTCAGAAATCGCTCGTCAATTCTTCCTCACAGGTCGCCCTTGTTGGCGCTAATATCTGCCCCATTGAAAGCCTTGATTACGAGATTTTTGATAATGATTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTTCAGATATTTCAATACTTGGTTATTAAATGGTTGTCTTGTTTCTTGATCGGTCTGATTATGGGTCTTGTTGGGTTCTTCAACAATCTGGCAGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATTGGATGGCTTTTCTTGTTTTCTCTGTTTCAAATCTACTTCTCACCCTATTCGCATCTGTCATTACGGCACTGATCTGCCCTCTAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGTGTGGACGCCCCTGGAATATTATCGCCTAGGACATTGTTAGTGAAGGGGTGTTTCAAAGTATTTGGTTTAACTTGGAGATGGCTATACCATCTCAAGAAGGATCGAGATAGGCGGGATCTTGTAACATGTGGTGCTGCTGCTGGAATCGCTGCTGCTTTTCGTGCTCCCGTTGGTGGCGTGTTGTTTGCTTTTGAAGAGATGGCATCATGGAAAGGCATTGTTTACAAAGTTTTACTGGCTTGCTCTGTCTCGATTTTCACGTCATGTCTTCTTTTCGGATTACCGTGGTTCGCATCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATCTGTCCTACGATAGGTCGATCGGGTAACTTCAAGAAGTTTCAGTGTTCTCCCGATCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAGAACCTCTTTAGCAAAGGCACAGAATCTGAGTTTCAATTCTCATCAATGCTCACATTTTTCGTTACATGTTTTTCGTTGAGCGTTCTTAGTTACGGTACGGTTGCTCCGGTTGGCCTGTTTGTTCCTGTTATTGTGACAGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCGGTCCATACACGAACCTTAGCCATGGCTTCTTTGCCATATTGGGTGCTGCTTCGTTTCTCGGGGGGTCGATGAGGACGACCGTTTCTTTATGTGTTATTATGCTCGAATTGACCAATAATTTGTTGTTGCTGCCTTTAGTAATGTTGGTTCTCCTTATTTCCAAGACTGTGGCTGATGCTTTCAACTGTAATATTTACAACCAGATCATGAAAGCCAAGGGGTTCCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTGACTGTTGCCAGTGTGTTAACAAGTCCACTTCAATTATTTTGTGGCATCGAGAAGGTTCGTAACGTAGTAAACGTTCTCAAATGGACGAGCCATCACGGATTTCCCGTCGTCGACGAGCCTCCTTTCTCGGAATTCCCTGTTTTATATGGTCTAATTCTCAGAGCTCATCTCATCGTGTTGTTAAAGAAGAAAGCTTTCTTGTCGGTTCCAACACTAGAATCAGACAGAAAGGATGCCTTAAAGCTATTATCAGCTGATGATTTTGCAATGATGGGTTCGGGTGATGTCAATCGGATTGAAGATATTCAGTTGACTGATGAAGAGATGGAGATGTTCATCGATCTACATCCATTCGCTAATACCTCGCCTTGTACTGTCTTGGAGACGATGTCGTTAGCAAAGGCTTTTGCAATTTTTCGAGAAACTAGTTTAAGACATATGCTAGTGATACCTAAGGCCCCCGGGAGATCGCCTGTGGTCGGTATATTGACTCGGCACGACTTCATGCCGGATTACATTCTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGCCAACACATTTTGAAAATGGACAGAAAGCTTCAGAAACAACATCCTGTAAATCCCGTTCGTGGCCCTGCACTTTTCATTTATCTTAATCCCCTCCGTTACGGCGGCGGACCGGAGCAATTTCGCCACCTATGCTGTTGCCGTCTTCTCTCCGACACCTCTCCGGCCGTACCTTCTTTACCTTTGTTCTCTCACCACCGTCTCTATAATCCCAAGCCCCTTCCGATTCTCCCCTGTTTTCAGTTCTTTCCCAAACCCCTTCTTCGAATTCGCGCCATTGATGCTGCGCAACCTTACGACTACGAATCCAGAATGGCATCCCGTTTTCACAACTCCGAGAAGCTCAAAATCGCCATCGTTGGGTTTGGTAACTTCGGTCAATTTCTCGCTAAAACAATCGTCCGGCAAGGTCATACCGTCTTGTCTCATTCCCGAGTTGACCACTCCGATGCGGCTCGTAAGCTCGGGGTTTCGTTTTTTTCCGACCCGGATGACCTTGCTGAAGAACACCCAGAGGTGATTTTGCTCTGTACGTCGATAATTTCAACTGAGAGTGTTCTCCGATCGTTGCCATTGCAGAGATTGAAGAGGAATACATTGGTAGTAGATGTGCTTTCGGTGAAGGAGTTCCCGAAAAGCTTAATGCTGGAGCTATTGCCTCCGGATTTTGATATAATTTGTTCTCACCCAATGTTTGGCCCTGAAAGCGCTGCGAAAGGGTGGAATGAGCTGTTCTTCGTTTACGAGAAGGTTCGAATTGGGTCGGATGAATCTAGGGTTTCACGCTGTGAGAAATTTTTGAGTATTTTTGAGAGAGAGGGTTGCAGAATGGTGGAAATGAGCTGTGTGGATCATGATAGATATGCGGCTGAATCGCAATTCATTACTCATACGGTTGGGAGAGTTTTGAATATGTTGATGTTGGAATCTACACCGATTAATACTAAAGGGTATGAAACTTTGTTGGATTTGGTGAAGAACACTGCTGCAGATAGTTTCGATTTGTATTATGGTTTGTTTATGTATAATAAGAACGCGATGGAGATGATCGAGAGATTGGATTTGGCTTTTGGAGCTTTGAAACAACAGCTTTTTGGGCGATTGCATGATATGGTAAGGAAGCAATTGTTTGGAAACGGTGAAAAATTGCAAACATTGCCTGAAAATCCTCCTCAAAATGGGGCTTCTTTTGCACTGACATCTTATCTGGAAGCTACCAGGCAAGTGAAGCTTCAGAAGAATAAACCCTCTCTATATTTCTTCAGGTTTCAGGACCTTCCTCCAACTTATGACATCAAAGCCACAAAACTTGAGGAAAATTCAAAGCTCAAAATTGCTGTTGTTGGATTTGGTAACTTCGGTCAATTTCTTGCCAAGACGATAGTAAAACAAGGTCACACTGTGTTAGCCTACTCGAGGTCGGACTACTCAGACGTAGCAGAAGAGATGGGCATCTCTTACTTTTCTGATATGGATGATCTATGTGAAGAACACCCAGAAGTAGTTCTTCTATGCACTTCCATTCTTTCAACAGAGAAAGTTCTCAGATCATTACCTTTTCGGAGATTGAAACGAAACACTTTGTTTGTCGACGTACTTTCCGTGAAAGAATTTCCAAGAAATTTGTTTCTTCAAATTTTACCCCCGGACTTCGACATCCTCTGCACACATCCTATGTTCGGGCCAGAGAGTGGTAAGAACGGGTGGAACGATCTTTCCTTTGTTTATGATAAGGTTCGAATAGGAAATGAGGAATCGAGAGCGTTCCGTTGCAACTGCTTTCTTGATATATTTTCGAGTGAAGGGTGCCGAATGGTGGAAATGTCGTGCTACGATCACGACCGGCATGCAGCAGGGTCACAGTTCATTACCCATACAATGGGGAGAGTTTTAGAAAAGTTGAGTTTGAGCTCTACACCAATTAACACCAAAGGTTATAATACCTTGTTGGACTTGGTGGCGAACACTTCTGGAGATAGCTTTGATCTTTACTATGGTCTGTTTATGTACAATGCAAATTCCATGGAGCAACTCGAGCGGTTGGACTTGGCTTTTGAAGCATTGAAGAAGCAACTCTTTGGCCGTTTGCACGACGTTCTTCGGAAGCAACTTTTTGAGAATACAAATGACATCATAGACGCACAGGAAGATTTAAAGATAATGCCATATCAGATCGGCACTGCTGCTCTAAGCTTCTCTGATTCTCGTGATCTTCGTTAA 4134 43.9 MDAANPSNGDEESIITPLLAPQKSLVNSSSQVALVGANICPIESLDYEIFDNDFFMQDWRSREDFQIFQYLVIKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYWMAFLVFSVSNLLLTLFASVITALICPLAAGSGIPEVKAYLNGVDAPGILSPRTLLVKGCFKVFGLTWRWLYHLKKDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWKGIVYKVLLACSVSIFTSCLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCSPDHYNDLASLIFNTNDDAIKNLFSKGTESEFQFSSMLTFFVTCFSLSVLSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNCNIYNQIMKAKGFPYLEGHVEPYMRQLTVASVLTSPLQLFCGIEKVRNVVNVLKWTSHHGFPVVDEPPFSEFPVLYGLILRAHLIVLLKKKAFLSVPTLESDRKDALKLLSADDFAMMGSGDVNRIEDIQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKAFAIFRETSLRHMLVIPKAPGRSPVVGILTRHDFMPDYILSLHPLLEKSRWKSQHILKMDRKLQKQHPVNPVRGPALFIYLNPLRYGGGPEQFRHLCCCRLLSDTSPAVPSLPLFSHHRLYNPKPLPILPCFQFFPKPLLRIRAIDAAQPYDYESRMASRFHNSEKLKIAIVGFGNFGQFLAKTIVRQGHTVLSHSRVDHSDAARKLGVSFFSDPDDLAEEHPEVILLCTSIISTESVLRSLPLQRLKRNTLVVDVLSVKEFPKSLMLELLPPDFDIICSHPMFGPESAAKGWNELFFVYEKVRIGSDESRVSRCEKFLSIFEREGCRMVEMSCVDHDRYAAESQFITHTVGRVLNMLMLESTPINTKGYETLLDLVKNTAADSFDLYYGLFMYNKNAMEMIERLDLAFGALKQQLFGRLHDMVRKQLFGNGEKLQTLPENPPQNGASFALTSYLEATRQVKLQKNKPSLYFFRFQDLPPTYDIKATKLEENSKLKIAVVGFGNFGQFLAKTIVKQGHTVLAYSRSDYSDVAEEMGISYFSDMDDLCEEHPEVVLLCTSILSTEKVLRSLPFRRLKRNTLFVDVLSVKEFPRNLFLQILPPDFDILCTHPMFGPESGKNGWNDLSFVYDKVRIGNEESRAFRCNCFLDIFSSEGCRMVEMSCYDHDRHAAGSQFITHTMGRVLEKLSLSSTPINTKGYNTLLDLVANTSGDSFDLYYGLFMYNANSMEQLERLDLAFEALKKQLFGRLHDVLRKQLFENTNDIIDAQEDLKIMPYQIGTAALSFSDSRDLR 1377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9289774 9298936 - CmaCh12G011840.1 Cma12g01184 305674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01184 1377 CDD CBS_pair_voltage-gated_CLC_euk_bac 453 623 - -
Cma12g01184 1377 ProSiteProfiles Prephenate/arogenate dehydrogenase domain profile. 1081 1360 IPR003099 GO:0004665|GO:0006571|GO:0008977
Cma12g01184 1377 Gene3D - 1067 1252 - -
Cma12g01184 1377 Gene3D - 734 924 - -
Cma12g01184 1377 Pfam Prephenate dehydrogenase, nucleotide-binding domain 770 882 IPR046826 -
Cma12g01184 1377 Pfam Prephenate dehydrogenase, nucleotide-binding domain 1096 1243 IPR046826 -
Cma12g01184 1377 PANTHER AROGENATE DEHYDROGENASE-RELATED 709 1034 IPR045011 GO:0006571|GO:0033730
Cma12g01184 1377 Coils Coil 1309 1329 - -
Cma12g01184 1377 SUPERFAMILY CBS-domain pair 444 621 IPR046342 -
Cma12g01184 1377 SUPERFAMILY Clc chloride channel 52 443 IPR014743 -
Cma12g01184 1377 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 922 1003 IPR008927 -
Cma12g01184 1377 Gene3D Clc chloride channel 282 442 - -
Cma12g01184 1377 Gene3D Clc chloride channel 66 274 - -
Cma12g01184 1377 Pfam CBS domain 573 620 IPR000644 -
Cma12g01184 1377 ProSiteProfiles Prephenate/arogenate dehydrogenase domain profile. 753 1032 IPR003099 GO:0004665|GO:0006571|GO:0008977
Cma12g01184 1377 ProSiteProfiles CBS domain profile. 571 631 IPR000644 -
Cma12g01184 1377 PANTHER AROGENATE DEHYDROGENASE 1, CHLOROPLASTIC 709 1034 - -
Cma12g01184 1377 PANTHER AROGENATE DEHYDROGENASE-RELATED 1067 1348 IPR045011 GO:0006571|GO:0033730
Cma12g01184 1377 PANTHER AROGENATE DEHYDROGENASE 1, CHLOROPLASTIC 1067 1348 - -
Cma12g01184 1377 Pfam Voltage gated chloride channel 233 422 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma12g01184 1377 Pfam Voltage gated chloride channel 131 181 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma12g01184 1377 Pfam Voltage gated chloride channel 185 255 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma12g01184 1377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1079 1246 IPR036291 -
Cma12g01184 1377 Gene3D - 443 623 IPR046342 -
Cma12g01184 1377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 748 918 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01184 Cma-Chr12:9289774 Cma16g00762 Cma-Chr16:4173796 1.09E-71 dispersed
Cma12g01184 Cma-Chr12:9289774 Cma05g01262 Cma-Chr5:9652038 1.70E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01184 K15227 - csv:101214147 1115.14