Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01192 ATGGAGGAAAACGAGAAGTGTGGCTGCTGGGCTGTCCTTAAACGCACCGTTTCGGACGCCTCCAAATCTTCCCCCTCCTCCAAACACTCCCCCAACTCCATTCCTCGTGTTACTCTGCTTTACGATTCAGCTACCGAGACGCGGTACCTAAACGCAAGCAACCGAGATTTCTGTCCTCCGGCCGAAGCTCGGCTATCGTTCGACAATGCTCCGCCGCCGCCGTCCTCCGAGGACAAAAACAAGCGGCAGTTACTGAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGAAATTTCCGACCGGATAGCATACTTGGAGAAGGAGGGTTTGGATTCGTCTTCAAAGGATGGATCGAAGAGAATGGCACAGCGCCGGCCAAACCTGGATCAGGAATCACTGTCGCTGTAAAAAGCTTGAAGCCGGATGGTCTTCAAGGCCACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAGCTTATTGGATACTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTCATGACGCGTGGTAGTCTTGAAAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCCGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCTGAACCTGTTATATATAGAGATTTCAAGACATCAAACATATTGCTTGATACAGAGTACAATGCAAAGCTTTCGGATTTTGGCTTGGCAAAGGCTGGGCCTCAGGGAGACAAAACACACGTTTCCACTAGAGTAGTTGGAACATATGGCTATGCTGCACCAGAATATCTAATGACTGGACATTTGACGTCAAAGAGTGATGTCTATAGCTTTGGCGTCGTCCTACTCGAGATTTTAACTGGGAGGAGGTCGATGGACAAGAAACGTCCCAGTGGTGAGCAGAATCTAGTGTCGTGGGCTAGGCCATATTTAGAAGACAAAAGGAAGCTTTACCACATAGTGGATCCTCGCTTGGAGCTCAACTACTCCATCCAGGGGGTTCAGAAAATCTCTAAACTAGCTTCTCACTGCATCAGTAGGGATCCAAAATCTCGTCCCACCATGGATGAAGTTGTCAAGTTTCTCATTCCATTACAGGACCTTAACGACCTCGCCATCTTAGCCTATCATTCGCGCTTGTCTCAGCAAGGTCGACGAAAGAAGAAATCAGATGGACTGCACCAGCTAACATACACTCAGTCAAGAAACATTAGAACCTCTCCTATGAACGTCGGAATTGTTCATCGTCGTCGATGA 1305 47.36 MEENEKCGCWAVLKRTVSDASKSSPSSKHSPNSIPRVTLLYDSATETRYLNASNRDFCPPAEARLSFDNAPPPPSSEDKNKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLEDKRKLYHIVDPRLELNYSIQGVQKISKLASHCISRDPKSRPTMDEVVKFLIPLQDLNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPMNVGIVHRRR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9352555 9358692 + CmaCh12G011920.1 Cma12g01192 305682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01192 434 Pfam Protein tyrosine and serine/threonine kinase 103 378 IPR001245 GO:0004672|GO:0006468
Cma12g01192 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cma12g01192 434 ProSiteProfiles Protein kinase domain profile. 99 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01192 434 MobiDBLite consensus disorder prediction 17 36 - -
Cma12g01192 434 PANTHER OS01G0588500 PROTEIN 75 402 - -
Cma12g01192 434 PANTHER OS01G0588500 PROTEIN-RELATED 75 402 - -
Cma12g01192 434 CDD STKc_IRAK 105 381 - -
Cma12g01192 434 Gene3D Phosphorylase Kinase; domain 1 75 184 - -
Cma12g01192 434 Gene3D Transferase(Phosphotransferase) domain 1 185 393 - -
Cma12g01192 434 SUPERFAMILY Protein kinase-like (PK-like) 83 387 IPR011009 -
Cma12g01192 434 ProSitePatterns Protein kinases ATP-binding region signature. 105 137 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00532 Cma12g01192 CCT
Cma11g00529 Cma12g01192 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01192 Cma-Chr12:9352555 Cma15g00284 Cma-Chr15:1345263 1.48E-176 dispersed
Cma10g00532 Cma-Chr10:2436574 Cma12g01192 Cma-Chr12:9352555 0 wgd
Cma11g00529 Cma-Chr11:2542611 Cma12g01192 Cma-Chr12:9352555 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68980 PF07714 PK_Tyr_Ser-Thr 3.30E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01192 - - csv:101217498 818.15