Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g01202 | ATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATTCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTAGACATTGTGACAGTCCGATGTGGTCACTGCAGCAACCTCTGGTCGGTGAACATGGCCGCCGCTTTCCAATCTCTCTCATGGAAAAATTCTCAGGCATCAAGCCACAGCCACAATGGAAATGCAGCTGATTACAGGGTGGAATTGGGCTCATCATCAAAATGCAACAACAAAACGAAGACGAGAGCACCAATTCAAAACACTACAAATGATGATCAAAGGGTAATCAACAGACCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATAAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTACCCACACATTCAATGCCTCATGCTGGAAGCCAACAATCTCAAGACTCCGAATGATGGATCTGAGAAGCATTATATGTCAGTGCCAGGGCTGCACTATTGA | 570 | 44.21 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNSQASSHSHNGNAADYRVELGSSSKCNNKTKTRAPIQNTTNDDQRVINRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQCLMLEANNLKTPNDGSEKHYMSVPGLHY | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 9427635 | 9431144 | + | CmaCh12G012020.1 | Cma12g01202 | 305692 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g01202 | 189 | MobiDBLite | consensus disorder prediction | 89 | 108 | - | - | |
| Cma12g01202 | 189 | Pfam | YABBY protein | 8 | 162 | IPR006780 | GO:0007275 | |
| Cma12g01202 | 189 | Gene3D | High mobility group box domain | 100 | 161 | IPR036910 | - | |
| Cma12g01202 | 189 | MobiDBLite | consensus disorder prediction | 89 | 107 | - | - | |
| Cma12g01202 | 189 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 179 | - | - | |
| Cma12g01202 | 189 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 179 | IPR006780 | GO:0007275 | |
| Cma12g01202 | 189 | SUPERFAMILY | HMG-box | 105 | 158 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01709 | Cma-Chr4:8594676 | Cma12g01202 | Cma-Chr12:9427635 | 2.52E-39 | dispersed | |
| Cma12g01202 | Cma-Chr12:9427635 | Cma15g01149 | Cma-Chr15:7308199 | 6.76E-51 | dispersed | |
| Cma18g01098 | Cma-Chr18:8991641 | Cma12g01202 | Cma-Chr12:9427635 | 3.20E-25 | dispersed | |
| Cma10g00541 | Cma-Chr10:2483897 | Cma12g01202 | Cma-Chr12:9427635 | 1.48E-79 | wgd | |
| Cma11g00536 | Cma-Chr11:2583470 | Cma12g01202 | Cma-Chr12:9427635 | 3.28E-87 | wgd | |
| Cma12g01202 | Cma-Chr12:9427635 | Cma05g01287 | Cma-Chr5:9820965 | 4.65E-121 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36047 | PF04690 | YABBY | 5.00E-67 | CL0114 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g01202 | K25796 | - | csv:101219877 | 330.872 |