Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01220 | ATGGCCGGCATAACCCGAGACGATTCCGACCACGACAGCACATGCTCCTCCCTCACCCTCCCGGACTCGAGCCGTAGCTGGATGAGCAACCTAAGCTTCGGCAGTCGCCGAAGCAGCACGTCCGCCTTAGACGCCGCGTTATCCCCCTACAAACCGCACAAAGCAAACCAAGTGGCGTGGGAGGCGATGCGGTGGGTGAGACGCGTGAAAGGGCGCGTGGGGCTGGAGCACTTCCGGCTGCTACGGCGGGTGGGGAGCGGAGACATAGGGAATGTTTATTTGTGCGAAATAAGGAACCCGGTGGTGGGGCTGGCGCAGTGCTATTACGCAATGAAAGTGGTGGATAGAGAAGCGGTGTCGGTGAGGAATAAAGGGAGGAGAGCGGATATGGAGAAGGAGATTCTTAAGCTCATTGATCATCCCTTTTTGCCTACGCTTTATGCCCAGTTTGAAGCTTCCCATTACTCGTGTTTGGTTATGGAGTTTTGTCCCGGCGGCGATTTGTACGCCGCCCGCCAACGCCTCCCCGGAAAACGCTTTCCCATTCCTTCGGTCAAATTTTATGCGGCGGAGATAATTTTAGCGTTAGAGTATTTGCATATGATGGGGATAGTTTACAGAGATTTAAAGCCGGAAAACGTGCTGGTTAGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTCTGTCTCAAATGCGACGTCGTTCCGAAGCTCATCCGTTGCAGGACCACCGCCGAACGCCACGTCACAAAAACCTACTCCACTTCATCAACTACCTCCTGCGCCGCCGCTCCAATCCAGCCTGTCCTCTCCTGTTTCTCCATTACCCGCCGCCGAAACTCCACCACCATCACCACTATAACCGAACACGCCGCCGAATCCGCCGCCACCGTAGACGGCGAGTTCGACCCAGAACCGGAATTGATAGCGGAGCCGATGAATGCCCGGTCTAAATCCTTCGTTGGAACCCATGAGTATTTGGCGCCGGAGGTGATTTCCGGCCAAGGACACGGCAGCGCCGTCGATTGGTGGACGTTGGGGATTTTCCTCTATGAAATGTTGTACGGAAAAACCCCATTTAAAGGAGAAAATAACGAGAAAACCCTAATGAATATCTTGAAGCAGCCATTGACGTTTCCAAGAATTGGGGTTAGTAGCAACAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATCTAATAAGGAAGCTTTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTTAAAGGGTTCGGTTGAAATCAAAAGACATGAGTTTTTCAAAGGGGTAAATTGGGCATTAATCCGCTCGGTTCGTCCTCCGCAAGTCCCGAACTCCGATCATCTTCTTCACAAAACCCTAACCCAATCAAAATACCCGTCCAACTACGTACCCAAATTGACCAAGAAACAACGACAACAACCCTACCAAATCCCGTCTCCCCATTTCGATTACTTCTAA | 1464 | 51.37 | MAGITRDDSDHDSTCSSLTLPDSSRSWMSNLSFGSRRSSTSALDAALSPYKPHKANQVAWEAMRWVRRVKGRVGLEHFRLLRRVGSGDIGNVYLCEIRNPVVGLAQCYYAMKVVDREAVSVRNKGRRADMEKEILKLIDHPFLPTLYAQFEASHYSCLVMEFCPGGDLYAARQRLPGKRFPIPSVKFYAAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTAERHVTKTYSTSSTTSCAAAPIQPVLSCFSITRRRNSTTITTITEHAAESAATVDGEFDPEPELIAEPMNARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLTFPRIGVSSNKEYEEMVKVEDLIRKLLVKNPKKRIGSLKGSVEIKRHEFFKGVNWALIRSVRPPQVPNSDHLLHKTLTQSKYPSNYVPKLTKKQRQQPYQIPSPHFDYF | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9513718 | 9516350 | + | CmaCh12G012200.1 | Cma12g01220 | 305710 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01220 | 487 | PANTHER | FLIPPASE KINASE 1-RELATED | 1 | 487 | - | - | |
Cma12g01220 | 487 | CDD | STKc_phototropin_like | 77 | 445 | - | - | |
Cma12g01220 | 487 | Pfam | Protein kinase domain | 318 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01220 | 487 | Pfam | Protein kinase domain | 79 | 254 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01220 | 487 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 204 | 216 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g01220 | 487 | ProSiteProfiles | Protein kinase domain profile. | 78 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01220 | 487 | Gene3D | Phosphorylase Kinase; domain 1 | 37 | 177 | - | - | |
Cma12g01220 | 487 | SUPERFAMILY | Protein kinase-like (PK-like) | 56 | 454 | IPR011009 | - | |
Cma12g01220 | 487 | PANTHER | PROTEIN KINASE PINOID 2 | 1 | 487 | - | - | |
Cma12g01220 | 487 | SMART | serkin_6 | 78 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01220 | 487 | Gene3D | Transferase(Phosphotransferase) domain 1 | 178 | 447 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01306 | Cma12g01220 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g01220 | Cma-Chr12:9513718 | Cma03g00597 | Cma-Chr3:5305588 | 2.55E-152 | dispersed | |
Cma13g00505 | Cma-Chr13:5383852 | Cma12g01220 | Cma-Chr12:9513718 | 2.93E-144 | dispersed | |
Cma04g00637 | Cma-Chr4:3267258 | Cma12g01220 | Cma-Chr12:9513718 | 2.30E-118 | transposed | |
Cma12g01220 | Cma-Chr12:9513718 | Cma05g01306 | Cma-Chr5:9908568 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68981 | PF00069 | Pkinase | 1.50E-31 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01220 | K08286 | - | csv:101202905 | 775.778 |