Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01220 ATGGCCGGCATAACCCGAGACGATTCCGACCACGACAGCACATGCTCCTCCCTCACCCTCCCGGACTCGAGCCGTAGCTGGATGAGCAACCTAAGCTTCGGCAGTCGCCGAAGCAGCACGTCCGCCTTAGACGCCGCGTTATCCCCCTACAAACCGCACAAAGCAAACCAAGTGGCGTGGGAGGCGATGCGGTGGGTGAGACGCGTGAAAGGGCGCGTGGGGCTGGAGCACTTCCGGCTGCTACGGCGGGTGGGGAGCGGAGACATAGGGAATGTTTATTTGTGCGAAATAAGGAACCCGGTGGTGGGGCTGGCGCAGTGCTATTACGCAATGAAAGTGGTGGATAGAGAAGCGGTGTCGGTGAGGAATAAAGGGAGGAGAGCGGATATGGAGAAGGAGATTCTTAAGCTCATTGATCATCCCTTTTTGCCTACGCTTTATGCCCAGTTTGAAGCTTCCCATTACTCGTGTTTGGTTATGGAGTTTTGTCCCGGCGGCGATTTGTACGCCGCCCGCCAACGCCTCCCCGGAAAACGCTTTCCCATTCCTTCGGTCAAATTTTATGCGGCGGAGATAATTTTAGCGTTAGAGTATTTGCATATGATGGGGATAGTTTACAGAGATTTAAAGCCGGAAAACGTGCTGGTTAGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTCTGTCTCAAATGCGACGTCGTTCCGAAGCTCATCCGTTGCAGGACCACCGCCGAACGCCACGTCACAAAAACCTACTCCACTTCATCAACTACCTCCTGCGCCGCCGCTCCAATCCAGCCTGTCCTCTCCTGTTTCTCCATTACCCGCCGCCGAAACTCCACCACCATCACCACTATAACCGAACACGCCGCCGAATCCGCCGCCACCGTAGACGGCGAGTTCGACCCAGAACCGGAATTGATAGCGGAGCCGATGAATGCCCGGTCTAAATCCTTCGTTGGAACCCATGAGTATTTGGCGCCGGAGGTGATTTCCGGCCAAGGACACGGCAGCGCCGTCGATTGGTGGACGTTGGGGATTTTCCTCTATGAAATGTTGTACGGAAAAACCCCATTTAAAGGAGAAAATAACGAGAAAACCCTAATGAATATCTTGAAGCAGCCATTGACGTTTCCAAGAATTGGGGTTAGTAGCAACAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATCTAATAAGGAAGCTTTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTTAAAGGGTTCGGTTGAAATCAAAAGACATGAGTTTTTCAAAGGGGTAAATTGGGCATTAATCCGCTCGGTTCGTCCTCCGCAAGTCCCGAACTCCGATCATCTTCTTCACAAAACCCTAACCCAATCAAAATACCCGTCCAACTACGTACCCAAATTGACCAAGAAACAACGACAACAACCCTACCAAATCCCGTCTCCCCATTTCGATTACTTCTAA 1464 51.37 MAGITRDDSDHDSTCSSLTLPDSSRSWMSNLSFGSRRSSTSALDAALSPYKPHKANQVAWEAMRWVRRVKGRVGLEHFRLLRRVGSGDIGNVYLCEIRNPVVGLAQCYYAMKVVDREAVSVRNKGRRADMEKEILKLIDHPFLPTLYAQFEASHYSCLVMEFCPGGDLYAARQRLPGKRFPIPSVKFYAAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTAERHVTKTYSTSSTTSCAAAPIQPVLSCFSITRRRNSTTITTITEHAAESAATVDGEFDPEPELIAEPMNARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLTFPRIGVSSNKEYEEMVKVEDLIRKLLVKNPKKRIGSLKGSVEIKRHEFFKGVNWALIRSVRPPQVPNSDHLLHKTLTQSKYPSNYVPKLTKKQRQQPYQIPSPHFDYF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9513718 9516350 + CmaCh12G012200.1 Cma12g01220 305710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01220 487 PANTHER FLIPPASE KINASE 1-RELATED 1 487 - -
Cma12g01220 487 CDD STKc_phototropin_like 77 445 - -
Cma12g01220 487 Pfam Protein kinase domain 318 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01220 487 Pfam Protein kinase domain 79 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01220 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Cma12g01220 487 ProSiteProfiles Protein kinase domain profile. 78 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01220 487 Gene3D Phosphorylase Kinase; domain 1 37 177 - -
Cma12g01220 487 SUPERFAMILY Protein kinase-like (PK-like) 56 454 IPR011009 -
Cma12g01220 487 PANTHER PROTEIN KINASE PINOID 2 1 487 - -
Cma12g01220 487 SMART serkin_6 78 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01220 487 Gene3D Transferase(Phosphotransferase) domain 1 178 447 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01306 Cma12g01220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01220 Cma-Chr12:9513718 Cma03g00597 Cma-Chr3:5305588 2.55E-152 dispersed
Cma13g00505 Cma-Chr13:5383852 Cma12g01220 Cma-Chr12:9513718 2.93E-144 dispersed
Cma04g00637 Cma-Chr4:3267258 Cma12g01220 Cma-Chr12:9513718 2.30E-118 transposed
Cma12g01220 Cma-Chr12:9513718 Cma05g01306 Cma-Chr5:9908568 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68981 PF00069 Pkinase 1.50E-31 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01220 K08286 - csv:101202905 775.778