Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01226 ATGGTGGGTGGCGTTTTGGAGTGGATTAAAGTTTCGATTTTGGGCTGTTTTTTGGTGGTGGTGGCGCTGAGAGCGGCGGTGGTGCTATGGTGGCGGCCGAGGAAAATCGAAGACCATTTTTTCCGGCAAGGAATTAGAGGACCTCCTTATCGTTTCTTCATCGGAAATGTTAAGGAACTTGTCGGAATGATGATTAAAGCTTCTTCTGATCATTCTTTTCCTAATTTTTCTCATAACATTCTTCCTCGTGTTCTTCCGTTTTATCATCACTGGAAGAAGATTTATGGTTCGAAATTTTTGGTGTGGTTCGGGCCGACGGTGAGATTAGCGGTGTCTGATCCGGACCTCATTCGAGAAATCTTCACATCAAAATCAGAATTCTGTGAGAAAAATGAACCTCACCCACTGGTTAAACAGCTAGAAGGTGATGGCCTCCTCAGCCTCAAAGGCCAAAAATGGGCTCTTCATCGCAAGATCATCTCTCCTTCTTTCCACATGGACAATCTCAAATTGTTGATTCCAGTGATGGCAAAAAGTGTCGTGGAAATGTTGGAGAAATGGTCAGCAATGTCAGCAGCTTCCGGTGAGGTGGAAATTGAAGTTTCCGAATGGTTCCAAACCCTAACCGAAGACGTCATCACTAGGACCGCCTTTGGCTCCAGCTATGAAGATGGAAAAGCCATTTTTCGCTTACAAGCTCAACAAATGGTCCTTGCTTCTCAAGCCTTTGAGAAAGTTTTCATCCCTGGCTACAGATTCTTACCGACAAGAACGAACGTGAATTCGTGGAGACTGGATCGAGAAATAAGGAAATCGTTGTTGAAACTGATCGACCGACGTCGGGAGAGCTCGATCGAGAGCTCAAAGGATTTACTAGGGCTAATGATAAGGGCATCAAACACTTCTCCTTCATCAACTATCACTGTTAATGACATTGTTGAAGAGTGCAAGGGGTTCTTCTTTGCTGGCAAACAGACCACATCCAATTTGCTGACGTGGACAATGATCCTCATGGCCATGCACCCACAATGGCAGGTAAAGGCACGTGATGAGGTACTAAGGGAGTGTGGAGCACGTGACATACCCTCCAAAGATGATATTACAAAGCTTAAAACGTTGAGTATGATTGTCAATGAATCGTTACGGTTATACCCACCGACAGTGGCAACTATTCGACAAGCAAAAGCTGACGTGGAGCTTGGTGGTTACATGATTCCTCGTGGCACTGAACTGTTGATTCCAATTTTAGCAGTCCATCATGATCAAAAGATATGGGGGAATGATGTGAATGAGTTCAATCCAGGGAGATTTACTGAAGGAGTGGCTAGGGCAGCCAATCATCGAGTTGGATTCATTCCATTTGGACTTGGAGCTCGAACCTGTATCGGCCAAAACTTGGCTATATTGCAAGCAAAATTGGCTCTTGCAATCATACTTCAAAGATTCTCCTTTCGATTGGGACCTTCTTATCAGCACGCACCAGCAGTACAGATGCTACTTTATCCACGATATGGCGCACCAATTATCTTCCAAAAATTATCCACTCCATCGATCCCACAAGATCAACGATCATGA 1575 44.63 MVGGVLEWIKVSILGCFLVVVALRAAVVLWWRPRKIEDHFFRQGIRGPPYRFFIGNVKELVGMMIKASSDHSFPNFSHNILPRVLPFYHHWKKIYGSKFLVWFGPTVRLAVSDPDLIREIFTSKSEFCEKNEPHPLVKQLEGDGLLSLKGQKWALHRKIISPSFHMDNLKLLIPVMAKSVVEMLEKWSAMSAASGEVEIEVSEWFQTLTEDVITRTAFGSSYEDGKAIFRLQAQQMVLASQAFEKVFIPGYRFLPTRTNVNSWRLDREIRKSLLKLIDRRRESSIESSKDLLGLMIRASNTSPSSTITVNDIVEECKGFFFAGKQTTSNLLTWTMILMAMHPQWQVKARDEVLRECGARDIPSKDDITKLKTLSMIVNESLRLYPPTVATIRQAKADVELGGYMIPRGTELLIPILAVHHDQKIWGNDVNEFNPGRFTEGVARAANHRVGFIPFGLGARTCIGQNLAILQAKLALAIILQRFSFRLGPSYQHAPAVQMLLYPRYGAPIIFQKLSTPSIPQDQRS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9549605 9552737 - CmaCh12G012260.1 Cma12g01226 305716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01226 524 Pfam Cytochrome P450 87 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 SUPERFAMILY Cytochrome P450 45 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PANTHER CYTOCHROMEA2 7 508 - -
Cma12g01226 524 Gene3D Cytochrome P450 30 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS E-class P450 group I signature 92 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS E-class P450 group I signature 208 226 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g01226 524 PANTHER CYTOCHROME P450 FAMILY MEMBER 7 508 - -
Cma12g01226 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00573 Cma12g01226 CCT
Cma05g01311 Cma12g01226 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01055 Cma-Chr10:6520871 Cma12g01226 Cma-Chr12:9549605 5.24E-132 dispersed
Cma11g00556 Cma-Chr11:2693602 Cma12g01226 Cma-Chr12:9549605 0 dispersed
Cma12g01226 Cma-Chr12:9549605 Cma18g01090 Cma-Chr18:8964506 6.10E-126 dispersed
Cma09g00342 Cma-Chr9:1407434 Cma12g01226 Cma-Chr12:9549605 3.02E-35 transposed
Cma10g00573 Cma-Chr10:2620518 Cma12g01226 Cma-Chr12:9549605 0 wgd
Cma12g01226 Cma-Chr12:9549605 Cma05g01311 Cma-Chr5:9941119 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01226 K15639 - csv:101208789 928.317