Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01230 ATGGCGTCTGCAATTTCTCTTTGCTCTGTTTTTGTTGTTGTTCTTGTTCTGACTCAGTGGGTCAACTCGGAGCCGACTCAGGACAAACAGGCCCTTCTCGATTTTCTCTCTAAAGCTCCTCATGCCAATCGGCATCAATGGAATACCTCCAATTCCGTCTGTAATTGGATCGGCGTTCAGTGCAATTCCAATCAGTCGTTTGTTTATTCCCTCCGTTTGCCCGGCGCCGGCCTCGTCGGTAAGATTCCGGCCAACACGATTGGCAAATTGACTCAGCTTCGAGTTCTCAGCCTTCGCTCTAATCTTCTCTCCGGCAAGATCCCGTCGGATTTTTCTAATATGGTAATGCTGCAGAATCTGTATCTTCAGGATAATGCATTCTCCGGCGAGTTTCCGCCCAGTTTGACTCGTTTGACTCGGTTGACTCGGCTGGATTTGTCGTCGAATAACTTTTCCGGTACGATTCCGGCGGCCGTTGACAATCTGACCCACTTGACGAGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCAATCCCGCGAATCTCGGCGGTTAATTTAACAGACTTCAACGTCTCTAACAACAAACTCAACGGATCGATTCCAAAACCGTTGGCGAAATTCCCAACCTCCTCCTTCGCCGGAAATCTAAATCTCTGCGGCGGACCATTCCTCTCCTGCAACCCATCCACCTCTCCAGCACCGCCGCCGCAAAACCCACCAGCCGTCACTGTCGGGAAACCAAAAAACCGGTCCACAGCTGCCATAATCGGGATCATCGTCGGCGGTGTCTTCGCCGCAATTCTCCTCTTCCTCTGTATCCGGCGCCGCTCCCACCATCCAGCGAAGTTCCGGAAGCCATCGGCGGCGGCGAGAGCCATCTCGATAGTGGAGGCCGGGACGTCGTCGTCGAAATACGACATTACCGGAGGGTCGGTGGAGGCGGCCGAGAGGAACAAGCTGACGTTCTTCGAAGGGGGAAATTACAATTTCGATTTGCAGGATTTGTTGAGGGCTTCGGCGGAGGTGCTGGGGAAAGGAGACGTGGGAACGTCGTATAAGGCGGTGCTGGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGCGGCTACGAAGAAGGAATTCGAGATTCAAATGGAAGCTTTGGGGAAGATTAAACATCAAAATGTGGTTCCGCTTCGAGCCTTTTACTTCTCCAATGATGAGAAATTGCTGGTTTTTGATTATATCTCCACCGGAAATTTGTCGGCGGGCCTTCACGGTAGCAGAGGCTCCGGCAGGACACCATTAGACTGGGATTCAAGAATGAGAATAGCTCTAAGCGTGGGCAGGGGACTTGCTCATCTCCACCTCCCCTGCAACCTGGTTCACGGCAACATTAAATCCTCCAACGTCCTTCTCCGGCCACACCACGACGCCTGTATCACCGACTTCGGCCTAAACCCATTCTTCGCCACCGCCACGCCGCCGAATCGTCTCGCCGGTTACCGAGCGCCGGAGGTCCTGGAAACCCGAAAAGTCACCTTCAAATCCGACGTTTACAGCTACGGCGTCCTGCTCCTCGAGCTCTTGACCGGTAAAGCCCCCAACCAACAGTCCCTCGGCGAAGACGGCATCGACCTTCCCCGGTGGGTTGAGTCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCTGAATTGATGCGATTCCACAACATTGAAGAAGAGATGGTTCCGTTGCTTCAAGTCGCAATGTCTTGCGTTTCCACCGTCCCCGATCAACGACCGACGATGTCGAAAGTTGTACGGATGATCGAAAATATGAACAGAAGTGAGACCGACGACGGGTTGCGCCTGTCTTCCGATGACCCCTCTAAAGGCTCCGATGTTAACACGTCGCCGGCAGAATCGAGAACTCCGGCGTAG 1920 53.59 MASAISLCSVFVVVLVLTQWVNSEPTQDKQALLDFLSKAPHANRHQWNTSNSVCNWIGVQCNSNQSFVYSLRLPGAGLVGKIPANTIGKLTQLRVLSLRSNLLSGKIPSDFSNMVMLQNLYLQDNAFSGEFPPSLTRLTRLTRLDLSSNNFSGTIPAAVDNLTHLTRIFLQNNGFSGSIPRISAVNLTDFNVSNNKLNGSIPKPLAKFPTSSFAGNLNLCGGPFLSCNPSTSPAPPPQNPPAVTVGKPKNRSTAAIIGIIVGGVFAAILLFLCIRRRSHHPAKFRKPSAAARAISIVEAGTSSSKYDITGGSVEAAERNKLTFFEGGNYNFDLQDLLRASAEVLGKGDVGTSYKAVLEEGTTVVVKRLKDVAATKKEFEIQMEALGKIKHQNVVPLRAFYFSNDEKLLVFDYISTGNLSAGLHGSRGSGRTPLDWDSRMRIALSVGRGLAHLHLPCNLVHGNIKSSNVLLRPHHDACITDFGLNPFFATATPPNRLAGYRAPEVLETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVESVVREEWTAEVFDAELMRFHNIEEEMVPLLQVAMSCVSTVPDQRPTMSKVVRMIENMNRSETDDGLRLSSDDPSKGSDVNTSPAESRTPA 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9622730 9625659 - CmaCh12G012300.1 Cma12g01230 305720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01230 639 SUPERFAMILY L domain-like 32 210 - -
Cma12g01230 639 Pfam Protein kinase domain 341 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01230 639 Pfam Leucine rich repeat 79 126 IPR001611 GO:0005515
Cma12g01230 639 PANTHER OS05G0480400 PROTEIN 8 624 - -
Cma12g01230 639 Gene3D Transferase(Phosphotransferase) domain 1 413 623 - -
Cma12g01230 639 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Cma12g01230 639 MobiDBLite consensus disorder prediction 607 639 - -
Cma12g01230 639 Gene3D Phosphorylase Kinase; domain 1 307 412 - -
Cma12g01230 639 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Cma12g01230 639 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cma12g01230 639 SUPERFAMILY Protein kinase-like (PK-like) 342 604 IPR011009 -
Cma12g01230 639 PANTHER OS05G0588300 PROTEIN 8 624 - -
Cma12g01230 639 CDD TM_EGFR-like 249 280 - -
Cma12g01230 639 ProSiteProfiles Protein kinase domain profile. 338 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01230 639 MobiDBLite consensus disorder prediction 622 639 - -
Cma12g01230 639 Gene3D Ribonuclease Inhibitor 186 227 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00590 Cma12g01230 CCT
Cma11g00586 Cma12g01230 CCT
Cma05g01321 Cma12g01230 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01230 Cma-Chr12:9622730 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma16g00250 Cma-Chr16:1159018 Cma12g01230 Cma-Chr12:9622730 1.60E-103 dispersed
Cma10g00590 Cma-Chr10:2696267 Cma12g01230 Cma-Chr12:9622730 0 wgd
Cma11g00586 Cma-Chr11:2810031 Cma12g01230 Cma-Chr12:9622730 0 wgd
Cma12g01230 Cma-Chr12:9622730 Cma05g01321 Cma-Chr5:9993107 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68982 PF00069 Pkinase 1.20E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01230 - - csv:101205802 987.638